Guillaume Raffy
f686d89204
imagej's headless regression no longer causes tests to fail (as these failures only happen in headless mode, see issue #6 )
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also added a logging mechanism to reduce stdout pollution (printing to stdout doesn't play nicely with python's unittest mechanism)
2022-01-25 07:44:23 +01:00
e397e3aa0f
added a preprocess sequence plugin
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This was requested by Claire Bourlieu to ease the preprocessing. This preprocessing could easily be done manuelly with Fiji but a bit tedious...
2020-11-04 19:37:14 +01:00
ad18e2e451
more work on graffy/lipase#3 : added a plugin to detect globules based on circular symmetry.
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- the detection is not great at the moment (15 globules detected amongst the 50), because:
1. the parameters are probably not optimal
2. the mask used is incomplete
3. some particules are very difficult to detect anyway
- added documentation
- still need some more work:
1 output the radius of detected particles
2. analyse why detection is not optimal
3. handle weights w_r and w_a
4. filter out radial profiles that are not expected
5. improve the computation of the peakness s_p
v1.02
2020-04-17 19:30:48 +02:00
d382139a0d
fixed bug introduced today that caused the package file to not contain jars/Lib/fr.univ-rennes1.ipr.lipase.lib.jar
2020-04-10 17:21:12 +02:00
595fc09571
moved the build files outside the repository
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In order to prevent pollution of repository with temporary files, the build files can now be where the user wants via BUILD_ROOT_PATH makefile variable.
2020-04-10 15:14:33 +02:00
13eb92c76e
allows the user to choose the location of the tests output data
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This prevents pollution of git repository with temporary files and is done via a makefile variable TESTS_OUTPUT_DATA_PATH.
2020-04-10 13:26:05 +02:00
e8b1e331fe
added a function that creates an image containing a circle
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this function will be used for to complete #3
2020-04-02 15:52:43 +02:00
e3ab3b6140
v1.01 : added the "Ipr/Lipase/Compute Globules Area" plugin
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fixes #2
2020-03-27 16:49:21 +01:00
57c594cf4d
added documentation
2020-03-18 16:26:32 +01:00
68e2c82eae
improved documentation:
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- fixed markdown issues
- added minutes for today's meeting
- now make clean also cleans the documentation temporary files
2020-02-14 18:27:30 +01:00
f96b4a8ff6
fixed bug that caused make install to not updating the package when plugiins change
2019-10-08 17:52:30 +02:00
1919e67e8c
fixed bug that caused make install to fail on an existing install
2019-10-08 16:41:30 +02:00
38b5d2c6fb
fixed bug in makefile that caused the lipase package to have absolute paths instead of relative paths
2019-10-07 12:05:25 +02:00
8c3a5b0d72
lipase is now released as a package on an owncloud directory
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This will ease the deployment to users.
2019-10-04 18:48:35 +02:00
1c44113747
added missing install of ij opencv plugin
2019-10-04 12:11:15 +02:00
ad07463c64
fixes to continuous integration
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1. I forgot to specify fiji and raw data locations in jenkinsfile
2. the absence of fiji wasn't detected by the test
2019-10-04 11:47:34 +02:00
34fc0aca26
Replaced bash scripts with makefile.
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The resulting system is clearer and more generic (easier to change location of fiji or root images, as it is now located in one single place : the makefile). Some actions such as the installation of fiji are left as scripts outside the makefile.
2019-10-04 11:36:53 +02:00
Guillaume Raffy
5166363522
added basic jenkins file to automate the build of hello
2019-03-07 10:56:01 +01:00
Guillaume Raffy
6e903069ec
added dummy program to test jenkins
2019-03-07 10:32:23 +01:00
Guillaume Raffy
Guillaume Raffy