lipase

An image processing software suite for the project lipase (Véronique Vié, Institut de Physique de Rennes)

This software suite is developed as a python script for fiji (an image processing package based on imageJ).

What it does

As the development is at its early stages, it does not much at the moment:

• loads a sequence of images into fiji in the form of an hyperstack (5d images : width, height, depth, channels, time)

How to install

1. make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
2. make sure that fiji has the IJ-OpenCV-plugins
   • in Fiji, select the Help->Update... menu item
   • in the ImageJ Updater window, click on the Manage update sites button. This opens the Manage update sites window.
   • in the Manage update sites window, tick the IJ-OpenCV-plugins (URL = http://sites.imagej.net/IJ-OpenCV/) if it's not ticked.
   • click the close button of the Manage update sites window
   • click Apply changes button in the ImageJ Updater window
   • wait until the plugins are installed and quit Fiji
3. Install lipase
   • lipase is released as a package named lipase-<lipase-version>.zip. This package can be built from sources using the make package command, provided you have all the build tools on your machine (make, javac, zip).
   • simply unzip the package lipase-<lipase-version>.zip in Fiji root directory (the directory that contains Fiji executable eg /home/graffy/soft/Fiji.app)
4. launch fiji and check that you have lipase tools in the menu Plugins/Ipr/Lipase

How to use

see lipase-manual.pdf (this document can be built from sources using the make doc command, provided you have all the build tools on your machine (make, pdflatex, imagemagick)

Notes

http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:microscope_image_correlation_spectroscopy:start