Commit Graph

6 Commits

Author SHA1 Message Date
Guillaume Raffy fcd9dde587 added a figure to show another sequence type (globules without trap)
This sequence  `soleil2016/GGHL_rDGL_SGF55_lambda_Em_cinsuite_1/Pos0` needs to be processed for the article so I wanted to describe why the preprocessing doesn't give ideal results on it and how to improve it.
2022-03-08 18:32:20 +01:00
Guillaume Raffy e397e3aa0f added a preprocess sequence plugin
This was requested by Claire Bourlieu to ease the preprocessing.  This preprocessing could easily be done manuelly with Fiji but a bit tedious...
2020-11-04 19:37:14 +01:00
Guillaume Raffy ad18e2e451 more work on graffy/lipase#3 : added a plugin to detect globules based on circular symmetry.
-  the detection is not great at the moment (15 globules detected amongst the 50), because:
  1. the parameters are probably not optimal
  2. the mask used is incomplete
  3. some particules are very difficult to detect anyway
- added documentation
- still need some more work:
  1  output the radius of detected particles
  2. analyse why detection is not optimal
  3. handle weights w_r and w_a
  4. filter out radial profiles that are not expected
  5. improve the computation of the peakness s_p

v1.02
2020-04-17 19:30:48 +02:00
Guillaume Raffy 87e70aba22 - added user documentation for lipase imagej plugins
- the lipase manual pdf document is now released
2020-03-31 18:57:36 +02:00
Guillaume Raffy 57c594cf4d added documentation 2020-03-18 16:26:32 +01:00
Guillaume Raffy 838b84512a added the notes I took in meetings since the beginning of the project 2020-02-14 11:30:31 +01:00