30 lines
1.4 KiB
Markdown
30 lines
1.4 KiB
Markdown
# lipase
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An image processing software suite for the project lipase (Véronique Vié, Institut de Physique de Rennes)
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This software suite is developed as a python script for fiji (an image processing package based on imageJ).
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## What it does
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As the development is at its early stages, it does not much at the moment:
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- loads a sequence of images into fiji in the form of an hyperstack (5d images : width, height, depth, channels, time)
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## How to use
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1. make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
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2. make sure that fiji has the IJ-OpenCV-plugins
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- in Fiji, select the Help->Update... menu item
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- in the Manage update sites window, tick the IJ-OpenCV-plugins (URL = http://sites.imagej.net/IJ-OpenCV/) if it's not ticked.
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- click the close button of the Manage update sites window
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- click "Apply changes" button in the ImageJ Updater window
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- wait until the plugins are installed and quit Fiji
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3. Install lipase
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- lipase is released as a package named "lipase-<lipase-version>.zip". This package can be build from sources using the 'make package' command, provided you have all the build tools on your machine (make, javac, zip).
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- simply unzip the package "lipase-<lipase-version>.zip" in Fiji root directory
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4. launch fiji and check that you have lipase tools in the menu Plugins/Ipr/Lipase
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## Notes
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http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:microscope_image_correlation_spectroscopy:start
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