31 lines
1.5 KiB
Markdown
31 lines
1.5 KiB
Markdown
# lipase
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An image processing software suite for the project lipase (Véronique Vié, Institut de Physique de Rennes)
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This software suite is developed as a python script for fiji (an image processing package based on imageJ).
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## What it does
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As the development is at its early stages, it does not much at the moment:
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- loads a sequence of images into fiji in the form of an hyperstack (5d images : width, height, depth, channels, time)
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## How to use
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1. make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
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2. make sure that fiji has the IJ-OpenCV-plugins
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- in Fiji, select the Help->Update... menu item
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- in the Manage update sites window, tick the IJ-OpenCV-plugins (URL = http://sites.imagej.net/IJ-OpenCV/) if it's not ticked.
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- click the close button of the Manage update sites window
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- click "Apply changes" button in the ImageJ Updater window
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- wait until the plugins are installed, then restart fiji
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3. launch fiji
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4. from fiji, click on File->new->script... The script window should appear.
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5. with the script window selected, choose the File->open... menu item.
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6. from the file browser that just appeared, locate and choose the file lipase.py from this repository, then click Open. You should see the script lipase.py appear in the script window
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7. The script is executed when you click on the script editor's run button.
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## Notes
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http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:microscope_image_correlation_spectroscopy:start
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