lipase

An image processing software suite for the project lipase (Véronique Vié, Institut de Physique de Rennes)

This software suite is developed as a python script for fiji (an image processing package based on imageJ).

What it does

As the development is at its early stages, it does not much at the moment:

loads a sequence of images into fiji in the form of an hyperstack (5d images : width, height, depth, channels, time)

make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
make sure that fiji has the IJ-OpenCV-plugins
- in Fiji, select the Help->Update... menu item
- in the Manage update sites window, tick the IJ-OpenCV-plugins (URL = http://sites.imagej.net/IJ-OpenCV/) if it's not ticked.
- click the close button of the Manage update sites window
- click "Apply changes" button in the ImageJ Updater window
- wait until the plugins are installed and quit Fiji
Install lipase
- lipase is released as a package named "lipase-.zip". This package can be build from sources using the 'make package' command, provided you have all the build tools on your machine (make, javac, zip).
- simply unzip the package "lipase-.zip" in Fiji root directory
launch fiji and check that you have lipase tools in the menu Plugins/Ipr/Lipase