42 lines
1.6 KiB
Makefile
42 lines
1.6 KiB
Makefile
SHELL:=/bin/bash
|
|
FIJI_ROOT_PATH:=~/soft/Fiji.app
|
|
FIJI_EXE_PATH=$(FIJI_ROOT_PATH)/ImageJ-linux64
|
|
# RAW_IMAGES_ROOT_PATH:='/opt/ipr/cluster/work.global/graffy/jenkins-store/lipase/raw-images'
|
|
RAW_IMAGES_ROOT_PATH:=$(shell echo ~/work/lipase/raw-images)
|
|
LIB_SRC_FILES=$(shell find ./src/lipase -name "*.py")
|
|
|
|
.PHONY: all
|
|
all: test0001
|
|
|
|
$(FIJI_ROOT_PATH)/jars/Lib/fr.univ-rennes1.ip.lipase.lib.jar: $(LIB_SRC_FILES)
|
|
pushd ./src; \
|
|
mkdir -p $(FIJI_ROOT_PATH)/jars/Lib ; \
|
|
find ./lipase -name "*.py" > /tmp/files.txt ; \
|
|
jar cvf $(FIJI_ROOT_PATH)/jars/Lib/fr.univ-rennes1.ip.lipase.lib.jar @/tmp/files.txt ; \
|
|
popd
|
|
|
|
.PHONY: install_lipase_libs
|
|
install_lipase_libs: $(FIJI_ROOT_PATH)/jars/Lib/fr.univ-rennes1.ip.lipase.lib.jar
|
|
|
|
.PHONY: install_lipase_plugins
|
|
install_lipase_plugins:
|
|
mkdir -p $(FIJI_ROOT_PATH)/plugins/Ipr ; \
|
|
rsync -a ./src/ij-plugins/Ipr/ $(FIJI_ROOT_PATH)/plugins/Ipr/
|
|
|
|
.PHONY: install
|
|
install: install_lipase_libs install_lipase_plugins
|
|
|
|
.PHONY: test0001
|
|
test0001: install
|
|
# on macosx : /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './test0001.py'
|
|
# /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './tests/test0001.py' "lipase_src_root_path='$(pwd)',raw_images_root_path='/Users/graffy/ownCloud/ipr/lipase/raw-images'"
|
|
$(FIJI_EXE_PATH) --ij2 --headless --run './tests/test0001.py' "raw_images_root_path='$(RAW_IMAGES_ROOT_PATH)'" ; \
|
|
ERROR_CODE=$$? ; \
|
|
echo "Fiji 's return code : $$ERROR_CODE" ; \
|
|
ERROR_CODE=$$(cat '/tmp/test_result.txt') ; \
|
|
echo "test's return code : $$ERROR_CODE" ; \
|
|
exit $$ERROR_CODE
|
|
|
|
.PHONY: test
|
|
test: test0001
|