SHELL:=/bin/bash 
FIJI_ROOT_PATH:=~/soft/Fiji.app
FIJI_EXE_PATH=$(FIJI_ROOT_PATH)/ImageJ-linux64
# RAW_IMAGES_ROOT_PATH:='/opt/ipr/cluster/work.global/graffy/jenkins-store/lipase/raw-images'
RAW_IMAGES_ROOT_PATH:=$(shell echo ~/work/lipase/raw-images)
LIB_SRC_FILES=$(shell find ./src/lipase -name "*.py")

.PHONY: all
all: test0001

$(FIJI_ROOT_PATH)/jars/Lib/fr.univ-rennes1.ip.lipase.lib.jar:  $(LIB_SRC_FILES)
	pushd ./src; \
		mkdir -p $(FIJI_ROOT_PATH)/jars/Lib ; \
		find ./lipase -name "*.py" > /tmp/files.txt ; \
        jar cvf $(FIJI_ROOT_PATH)/jars/Lib/fr.univ-rennes1.ip.lipase.lib.jar @/tmp/files.txt ; \
		popd

.PHONY: install_lipase_libs
install_lipase_libs: $(FIJI_ROOT_PATH)/jars/Lib/fr.univ-rennes1.ip.lipase.lib.jar

.PHONY: install_lipase_plugins
install_lipase_plugins:
	mkdir -p $(FIJI_ROOT_PATH)/plugins/Ipr ; \
		rsync -a ./src/ij-plugins/Ipr/ $(FIJI_ROOT_PATH)/plugins/Ipr/

.PHONY: install
install: install_lipase_libs install_lipase_plugins

.PHONY: test0001
test0001: install
	# on macosx : /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './test0001.py'
	# /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './tests/test0001.py' "lipase_src_root_path='$(pwd)',raw_images_root_path='/Users/graffy/ownCloud/ipr/lipase/raw-images'"
	$(FIJI_EXE_PATH) --ij2 --headless --run './tests/test0001.py' "raw_images_root_path='$(RAW_IMAGES_ROOT_PATH)'" ; \
		ERROR_CODE=$$? ; \
		echo "Fiji 's return code : $$ERROR_CODE" ; \
		ERROR_CODE=$$(cat '/tmp/test_result.txt') ; \
		echo "test's return code : $$ERROR_CODE" ; \
		exit $$ERROR_CODE

.PHONY: test
test: test0001