Projet lipase porté par vvie

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Guillaume Raffy 22d272733b added method to compute the median image of a sequence, in order to estimate the background also refactored to ease reading note: these changes were done by me on 18/06/2019 and are still work in progress...		2019-07-16 11:11:13 +02:00
.gitignore	Initial commit	2019-03-07 10:22:51 +01:00
Jenkinsfile	added image proc test in continuous integration	2019-04-08 19:18:45 +02:00
LICENSE	Initial commit	2019-03-07 10:22:51 +01:00
Makefile	added basic jenkins file to automate the build of hello	2019-03-07 10:56:01 +01:00
README.md	Reorganised directories to ease identification of sequences.	2019-04-01 12:26:37 +02:00
hello.cpp	and now in english	2019-03-07 14:54:41 +01:00
ijopencv-tester.py	fixed pep8	2019-04-12 16:28:40 +02:00
lipase.py	added method to compute the median image of a sequence, in order to estimate the background	2019-07-16 11:11:13 +02:00
test1.bash	added image proc test in continuous integration	2019-04-08 19:18:45 +02:00

lipase

An image processing software suite for the project lipase (Véronique Vié, Institut de Physique de Rennes)

This software suite is developed as a python script for fiji (an image processing package based on imageJ).

What it does

As the development is at its early stages, it does not much at the moment:

loads a sequence of images into fiji in the form of an hyperstack (5d images : width, height, depth, channels, time)

make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
launch fiji
from fiji, click on File->new->script... The script window should appear.
with the script window selected, choose the File->open... menu item.
from the file browser that just appeared, locate and choose the file lipase.py from this repository, then click Open. You should see the script lipase.py appear in the script window
The script is executed when you click on the script editor's run button.