notes taken at the meeting of 10/07/2020

README.md

@@ -15,13 +15,14 @@ As the development is at its early stages, it does not much at the moment:
 1. make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
 2. make sure that fiji has the `IJ-OpenCV-plugins`
     - in Fiji, select the `Help->Update...` menu item
+    - in the **ImageJ Updater** window, click on the **Manage update sites** button. This opens the **Manage update sites** window.
     - in the **Manage update sites** window, tick the `IJ-OpenCV-plugins` (URL = http://sites.imagej.net/IJ-OpenCV/) if it's not ticked.
     - click the `close` button of the **Manage update sites** window
     - click `Apply changes` button in the **ImageJ Updater** window
     - wait until the plugins are installed and quit Fiji
 3. Install lipase
     - lipase is released as a package named `lipase-<lipase-version>.zip`. This package can be built from sources using the `make package` command, provided you have all the build tools on your machine (make, javac, zip).
-    - simply unzip the package `lipase-<lipase-version>.zip` in Fiji root directory
+    - simply unzip the package `lipase-<lipase-version>.zip` in Fiji root directory (the directory that contains Fiji executable eg /home/graffy/soft/Fiji.app)
 4. launch fiji and check that you have lipase tools in the menu `Plugins/Ipr/Lipase`
 
 ## How to use

doc/notes/2020-06-23-meeting.md

@@ -0,0 +1,13 @@
+Réunion d'avancement du 23/06/2020
+==================================
+
+Présents
+--------
+- Véronique Vié
+- Guillaume Raffy
+
+Compte-rendu
+------------
+
+todo :
+- gérer le display_and_comments.txt manquant

doc/notes/2020-07-10-meeting.md

@@ -0,0 +1,28 @@
+Réunion d'avancement du 10/07/2020
+==================================
+
+Présents
+--------
+- Véronique Vié
+- Guillaume Raffy
+- Moulay Sahaka
+- Claire Bourlieu
+
+Compte-rendu
+------------
+taches :
+1. ajouter un plugin de prétraitement de fluo (seq-dark)/(white-dark)
+    -> la semaine prochaine
+2. retour visuel du traitement detect globules area
+    - otsu -> erode -> dilate -> fill holes -> analyze particules -> (conversion en volumes)
+3. outil de creation de masque de piège
+4. prétraitement de recalage de masque
+- ajouter un traitement 
+- moulay : bug d'interface dans display sequence : display sequence ouvre tous les canaux
+- sensible au décalage de masque
+- estimate_white : ok
+
+- problème display sequence: -> erreur
+    OLEOZOME/OL/cin2_PPL+conc_CO_NaTDC_/pos2 fluo
+        - 
+    70 frames