From 7b108fde5b7f6849486c52eab0adc0556eff346f Mon Sep 17 00:00:00 2001 From: Guillaume Raffy Date: Tue, 3 Nov 2020 15:58:51 +0100 Subject: [PATCH] notes taken at the meeting of 10/07/2020 --- README.md | 3 ++- doc/notes/2020-06-23-meeting.md | 13 +++++++++++++ doc/notes/2020-07-10-meeting.md | 28 ++++++++++++++++++++++++++++ 3 files changed, 43 insertions(+), 1 deletion(-) create mode 100644 doc/notes/2020-06-23-meeting.md create mode 100644 doc/notes/2020-07-10-meeting.md diff --git a/README.md b/README.md index d199cf7..ac73f53 100644 --- a/README.md +++ b/README.md @@ -15,13 +15,14 @@ As the development is at its early stages, it does not much at the moment: 1. make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/ 2. make sure that fiji has the `IJ-OpenCV-plugins` - in Fiji, select the `Help->Update...` menu item + - in the **ImageJ Updater** window, click on the **Manage update sites** button. This opens the **Manage update sites** window. - in the **Manage update sites** window, tick the `IJ-OpenCV-plugins` (URL = http://sites.imagej.net/IJ-OpenCV/) if it's not ticked. - click the `close` button of the **Manage update sites** window - click `Apply changes` button in the **ImageJ Updater** window - wait until the plugins are installed and quit Fiji 3. Install lipase - lipase is released as a package named `lipase-.zip`. This package can be built from sources using the `make package` command, provided you have all the build tools on your machine (make, javac, zip). - - simply unzip the package `lipase-.zip` in Fiji root directory + - simply unzip the package `lipase-.zip` in Fiji root directory (the directory that contains Fiji executable eg /home/graffy/soft/Fiji.app) 4. launch fiji and check that you have lipase tools in the menu `Plugins/Ipr/Lipase` ## How to use diff --git a/doc/notes/2020-06-23-meeting.md b/doc/notes/2020-06-23-meeting.md new file mode 100644 index 0000000..b7db31d --- /dev/null +++ b/doc/notes/2020-06-23-meeting.md @@ -0,0 +1,13 @@ +Réunion d'avancement du 23/06/2020 +================================== + +Présents +-------- +- Véronique Vié +- Guillaume Raffy + +Compte-rendu +------------ + +todo : +- gérer le display_and_comments.txt manquant \ No newline at end of file diff --git a/doc/notes/2020-07-10-meeting.md b/doc/notes/2020-07-10-meeting.md new file mode 100644 index 0000000..a3e33e7 --- /dev/null +++ b/doc/notes/2020-07-10-meeting.md @@ -0,0 +1,28 @@ +Réunion d'avancement du 10/07/2020 +================================== + +Présents +-------- +- Véronique Vié +- Guillaume Raffy +- Moulay Sahaka +- Claire Bourlieu + +Compte-rendu +------------ +taches : +1. ajouter un plugin de prétraitement de fluo (seq-dark)/(white-dark) + -> la semaine prochaine +2. retour visuel du traitement detect globules area + - otsu -> erode -> dilate -> fill holes -> analyze particules -> (conversion en volumes) +3. outil de creation de masque de piège +4. prétraitement de recalage de masque +- ajouter un traitement +- moulay : bug d'interface dans display sequence : display sequence ouvre tous les canaux +- sensible au décalage de masque +- estimate_white : ok + +- problème display sequence: -> erreur + OLEOZOME/OL/cin2_PPL+conc_CO_NaTDC_/pos2 fluo + - + 70 frames