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lipase
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Projet lipase porté par vvie
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Guillaume Raffy 14d3535388 put all ijopencv test code into a separate file 
As a result, lipase code is no longer using ijopencv.
ijopencv, based on javacpp provides poor compatibility with
opencv's cpython bindings, not to mention it's much less
convenient. Therefore, I'm not sure that I'll use ijopencv at all...
 		2019-04-12 12:53:17 +02:00
.gitignore Initial commit 2019-03-07 10:22:51 +01:00
Jenkinsfile added image proc test in continuous integration 2019-04-08 19:18:45 +02:00
LICENSE Initial commit 2019-03-07 10:22:51 +01:00
Makefile added basic jenkins file to automate the build of hello 2019-03-07 10:56:01 +01:00
README.md Reorganised directories to ease identification of sequences. 2019-04-01 12:26:37 +02:00
hello.cpp and now in english 2019-03-07 14:54:41 +01:00
ijopencv-tester.py put all ijopencv test code into a separate file 2019-04-12 12:53:17 +02:00
lipase.py put all ijopencv test code into a separate file 2019-04-12 12:53:17 +02:00
test1.bash added image proc test in continuous integration 2019-04-08 19:18:45 +02:00

README.md

lipase

An image processing software suite for the project lipase (Véronique Vié, Institut de Physique de Rennes)

This software suite is developed as a python script for fiji (an image processing package based on imageJ).

What it does

As the development is at its early stages, it does not much at the moment:

  • loads a sequence of images into fiji in the form of an hyperstack (5d images : width, height, depth, channels, time)

How to use

  1. make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
  2. launch fiji
  3. from fiji, click on File->new->script... The script window should appear.
  4. with the script window selected, choose the File->open... menu item.
  5. from the file browser that just appeared, locate and choose the file lipase.py from this repository, then click Open. You should see the script lipase.py appear in the script window
  6. The script is executed when you click on the script editor's run button.