lipase

Commit Graph

Author	SHA1	Message	Date
Guillaume Raffy	f7ad17f9e8	added a function to remove lighting non uniformity	2019-10-08 16:40:39 +02:00
Guillaume Raffy	61f6d9aeba	cleanup ununsed files and comments	2019-10-04 12:27:25 +02:00
Guillaume Raffy	fe389f7897	Fixed bug : now test0001.bash fails if the python script fails. This allows to now detect if the test succeeds or not. Also turned test_preprocessing into a proper unit test. This test is now much cleaner, as preprocessing.py does no longer require ij related code.	2019-10-01 12:25:15 +02:00
Guillaume Raffy	d9b8605dc2	fixed bug in plugins parameter passing that prevented test0001 to work	2019-09-30 16:18:32 +02:00
Guillaume Raffy	228ae4ab54	fixed errors detected by pylint	2019-09-18 12:34:52 +02:00
Guillaume Raffy	7994afd01a	started the abstraction of the image processing engine so that the lipase image processing can be executed without imagej if it's deemed to slow in the end.	2019-09-16 15:53:27 +02:00
Guillaume Raffy	b7b1f81fa7	improved source code layout	2019-09-16 11:54:13 +02:00
Guillaume Raffy	669d5822d1	made test001.bash usable on my workstation in addition to jenkin server	2019-09-13 15:16:12 +02:00
Guillaume Raffy	e8523efd18	added nearly all of estimate_white's post processing (particles removal) As a result, the implementation of estimate_white is getting closer to completion. However, the performance of fiji's gray morphology is very poor, which makes it practically unusable with the default settings provided in the original code (estimateWhiteFluoImageTelemos) Bug 2623 - Faire un traitement automatique pour les images du projet lipase	2019-09-13 15:15:01 +02:00
Guillaume Raffy	d50cd1825e	fixed bug that caused test0001 to fail finding lipase module	2019-07-17 19:11:14 +02:00
Guillaume Raffy	04e46b27dd	started to translate matlab telemosToolbox's preprocessing functions into jython so that they can benefit from fiji framework - started to write estimate_white, with its unit test - refactor: split lipase.py into modules - cleanup : removed unused files and unused jenkins steps - improved jenkinsfile Bug 2623 - Faire un traitement automatique pour les images du projet lipase	2019-07-17 16:56:05 +02:00

11 Commits