8c3a5b0d72
lipase is now released as a package on an owncloud directory
...
This will ease the deployment to users.
2019-10-04 18:48:35 +02:00
61f6d9aeba
cleanup ununsed files and comments
2019-10-04 12:27:25 +02:00
ad07463c64
fixes to continuous integration
...
1. I forgot to specify fiji and raw data locations in jenkinsfile
2. the absence of fiji wasn't detected by the test
2019-10-04 11:47:34 +02:00
34fc0aca26
Replaced bash scripts with makefile.
...
The resulting system is clearer and more generic (easier to change location of fiji or root images, as it is now located in one single place : the makefile). Some actions such as the installation of fiji are left as scripts outside the makefile.
2019-10-04 11:36:53 +02:00
Guillaume Raffy
78c8749aba
now jenkins build is no longer affected by a previous broken build
2019-10-01 12:45:22 +02:00
Guillaume Raffy
696d02757a
fixed bug in jenkins file (fiji location)
2019-09-30 16:04:30 +02:00
Guillaume Raffy
3f534229fd
added install of ij-opencv-plugins in fiji, as lipase uses them
...
the test of lipase can't currently succeed (it actually fails but the error is not currently detected) because lipase requires opencv.
2019-09-30 15:39:38 +02:00
Guillaume Raffy
04e46b27dd
started to translate matlab telemosToolbox's preprocessing functions into jython so that they can benefit from fiji framework
...
- started to write estimate_white, with its unit test
- refactor: split lipase.py into modules
- cleanup : removed unused files and unused jenkins steps
- improved jenkinsfile
Bug 2623 - Faire un traitement automatique pour les images du projet lipase
2019-07-17 16:56:05 +02:00
Guillaume Raffy
de1e837d60
added image proc test in continuous integration
...
this test (which runes fiji image processing) will help detect
regressions.
2019-04-08 19:18:45 +02:00
Guillaume Raffy
87923e96d9
now that we have the physix agent, we use it to build lipase, as it's more appropriate.
2019-03-21 15:44:17 +01:00
Guillaume Raffy
430e7b0c2f
as master agent fails (missing g++ compiler), made lipase buid use msspec_agent_amd64 as before
2019-03-20 15:54:49 +01:00
Guillaume Raffy
6e6ea63658
configured the jenkins file to use the agent 'master' to see if it works
2019-03-20 15:33:43 +01:00
Guillaume Raffy
01fee2f3b2
fixed bug in shell commands
2019-03-07 11:43:41 +01:00
Guillaume Raffy
cdc261f701
fixed comments
2019-03-07 11:33:59 +01:00
Guillaume Raffy
5166363522
added basic jenkins file to automate the build of hello
2019-03-07 10:56:01 +01:00
Guillaume Raffy
Guillaume Raffy