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5 Commits

Author SHA1 Message Date
Guillaume Raffy 228ae4ab54 fixed errors detected by pylint 2019-09-18 12:34:52 +02:00
Guillaume Raffy 7994afd01a started the abstraction of the image processing engine so that the lipase image processing can be executed without imagej if it's deemed to slow in the end. 2019-09-16 15:53:27 +02:00
Guillaume Raffy e8523efd18 added nearly all of estimate_white's post processing (particles removal) 
As a result, the implementation of estimate_white is getting closer to completion. However, the performance of fiji's gray morphology is very poor, which makes it practically unusable with the default settings provided in the original code (estimateWhiteFluoImageTelemos)

Bug 2623 - Faire un traitement automatique pour les images du projet lipase
 2019-09-13 15:15:01 +02:00
Guillaume Raffy d50cd1825e fixed bug that caused test0001 to fail finding lipase module 2019-07-17 19:11:14 +02:00
Guillaume Raffy 04e46b27dd started to translate matlab telemosToolbox's preprocessing functions into jython so that they can benefit from fiji framework 
- started to write estimate_white, with its unit test
- refactor: split lipase.py into modules
- cleanup : removed unused files and unused jenkins steps
- improved jenkinsfile

Bug 2623 - Faire un traitement automatique pour les images du projet lipase
 2019-07-17 16:56:05 +02:00