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fixed bug that caused test0001 to fail finding lipase module

This commit is contained in:
Guillaume Raffy 2019-07-17 19:11:14 +02:00
parent 04e46b27dd
commit d50cd1825e
2 changed files with 3 additions and 2 deletions
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2
tests/test0001.bash
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@ -1,3 +1,3 @@
./Fiji.app/ImageJ-linux64 --ij2 --headless --run './tests/test0001.py' "raw_images_root_path='/opt/ipr/cluster/work.global/graffy/jenkins-store/lipase/raw-images'" ./Fiji.app/ImageJ-linux64 --ij2 --headless --run './tests/test0001.py' "lipase_src_root_path='$(pwd)',raw_images_root_path='/opt/ipr/cluster/work.global/graffy/jenkins-store/lipase/raw-images'"
# on macosx : /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './test0001.py' # on macosx : /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './test0001.py'

3
tests/test0001.py
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@ -3,6 +3,7 @@
# # note: fiji's jython doesn't support encoding keyword # # note: fiji's jython doesn't support encoding keyword
#https://imagej.net/Scripting_Headless #https://imagej.net/Scripting_Headless
#@String lipase_src_root_path
#@String raw_images_root_path #@String raw_images_root_path
# String(label="Please enter your name",description="Name field") name # String(label="Please enter your name",description="Name field") name
@ -10,7 +11,7 @@
import sys import sys
print('python version %s' % sys.version) # prints python version print('python version %s' % sys.version) # prints python version
sys.path.append('/Users/graffy/ownCloud/ipr/lipase/lipase.git') # necessary if run from fiji as script otherwise jython fails to find lipase's modules such as catalog sys.path.append(lipase_src_root_path) # necessary if run from fiji as script otherwise jython fails to find lipase's modules such as catalog
from ij import IJ from ij import IJ
from lipase import Lipase, ImageLogger from lipase import Lipase, ImageLogger