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improved function name

This commit is contained in:
Guillaume Raffy 2019-09-16 11:40:26 +02:00
parent 669d5822d1
commit 6ef25bd5e0
1 changed files with 4 additions and 4 deletions
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8
preprocessing.py
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@ -39,7 +39,7 @@ def compute_max(images_file_path):
return max_image return max_image
def replace_outer_frame(image, band_width): def replace_border(image, band_width):
"""Overwrites the outer band of the image by duplicating the value of the pixels that touch this outer band """Overwrites the outer band of the image by duplicating the value of the pixels that touch this outer band
:param ImagePlus image: :param ImagePlus image:
@ -92,8 +92,8 @@ class WhiteEstimator(object):
self.average_size = average_size self.average_size = average_size
def _remove_particles(self, white_estimate): def _remove_particles(self, white_estimate):
perform_gray_morphology(white_estimate, operator='open', structuring_element_shape='square', structuring_element_radius=(self.open_size + 1)/2) perform_gray_morphology(white_estimate, operator='open', structuring_element_shape='square', structuring_element_radius=(self.open_size + 1) / 2)
perform_gray_morphology(white_estimate, operator='close', structuring_element_shape='square', structuring_element_radius=(self.close_size + 1)/2) perform_gray_morphology(white_estimate, operator='close', structuring_element_shape='square', structuring_element_radius=(self.close_size + 1) / 2)
def estimate_white(self, sequences, channel_ids, dark=None): def estimate_white(self, sequences, channel_ids, dark=None):
"""Estimation of the white fluorescence image shape of synchrotron light from experimental images of Telemos microscope. """Estimation of the white fluorescence image shape of synchrotron light from experimental images of Telemos microscope.
@ -204,7 +204,7 @@ class WhiteEstimator(object):
# modify spurious pixels on the side of the images # modify spurious pixels on the side of the images
try: try:
replace_outer_frame(white_estimate, 3) replace_border(white_estimate, 3)
except NotImplementedError as error: except NotImplementedError as error:
print('warning: replace_outer_frame is not implemented yet') print('warning: replace_outer_frame is not implemented yet')