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lipase/tests/test0001.bash

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made test001.bash usable on my workstation in addition to jenkin server
2019-09-13 15:16:12 +02:00
#!/bin/bash
FIJI_EXE_PATH=''
RAW_IMAGES_ROOT_PATH=''
improved source code layout
2019-09-16 11:54:13 +02:00
LIPASE_SRC_ROOT_PATH="$(pwd)/src"
made test001.bash usable on my workstation in addition to jenkin server
2019-09-13 15:16:12 +02:00
case "$(uname)" in
'Linux')
FIJI_EXE_PATH='./Fiji.app/ImageJ-linux64'
RAW_IMAGES_ROOT_PATH='/opt/ipr/cluster/work.global/graffy/jenkins-store/lipase/raw-images'
;;
'Darwin')
FIJI_EXE_PATH='/Applications/Fiji.app/Contents/MacOS/ImageJ-macosx'
Fixed bug : now test0001.bash fails if the python script fails. This allows to now detect if the test succeeds or not. Also turned test_preprocessing into a proper unit test. This test is now much cleaner, as preprocessing.py does no longer require ij related code.
2019-10-01 12:25:15 +02:00
RAW_IMAGES_ROOT_PATH='/Users/graffy/work/lipase/raw-images'
made test001.bash usable on my workstation in addition to jenkin server
2019-09-13 15:16:12 +02:00
;;
*)
Fixed bug : now test0001.bash fails if the python script fails. This allows to now detect if the test succeeds or not. Also turned test_preprocessing into a proper unit test. This test is now much cleaner, as preprocessing.py does no longer require ij related code.
2019-10-01 12:25:15 +02:00
echo "unhandled operating system : $(uname)"
made test001.bash usable on my workstation in addition to jenkin server
2019-09-13 15:16:12 +02:00
exit 1
esac
Fixed bug : now test0001.bash fails if the python script fails. This allows to now detect if the test succeeds or not. Also turned test_preprocessing into a proper unit test. This test is now much cleaner, as preprocessing.py does no longer require ij related code.
2019-10-01 12:25:15 +02:00
"$FIJI_EXE_PATH" --ij2 --headless --run './tests/test0001.py' "raw_images_root_path='$RAW_IMAGES_ROOT_PATH'"
started to translate matlab telemosToolbox's preprocessing functions into jython so that they can benefit from fiji framework - started to write estimate_white, with its unit test - refactor: split lipase.py into modules - cleanup : removed unused files and unused jenkins steps - improved jenkinsfile Bug 2623 - Faire un traitement automatique pour les images du projet lipase
2019-07-17 16:56:05 +02:00
# on macosx : /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './test0001.py'
made test001.bash usable on my workstation in addition to jenkin server
2019-09-13 15:16:12 +02:00
# /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --ij2 --headless --run './tests/test0001.py' "lipase_src_root_path='$(pwd)',raw_images_root_path='/Users/graffy/ownCloud/ipr/lipase/raw-images'"
Fixed bug : now test0001.bash fails if the python script fails. This allows to now detect if the test succeeds or not. Also turned test_preprocessing into a proper unit test. This test is now much cleaner, as preprocessing.py does no longer require ij related code.
2019-10-01 12:25:15 +02:00
ERROR_CODE=$?
echo "Fiji 's return code : $ERROR_CODE"
ERROR_CODE=$(cat '/tmp/test_result.txt')
exit $ERROR_CODE