72 lines
1.4 KiB
Markdown
72 lines
1.4 KiB
Markdown
Introduction
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============
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This is the Python MsSpec version with support for Python 3.x and dynamic memory allocation for Phagen and Spec
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To work with the git repository
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===============================
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You can clone this repository onto your local computer using git
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```Bash
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git clone https://git.ipr.univ-rennes1.fr/epsi/msspec_python3.git
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```
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This will create a folder named "msspec_python3" with all the source code inside.
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You can also clone the development branch:
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```Bash
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git clone --branch devel https://git.ipr.univ-rennes1.fr/epsi/msspec_python3.git
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```
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It is higly recommended to work in a Python virtual environment.
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To create one, you can use:
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```Bash
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virtualenv --python=python3 msspec_venv
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```
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or
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```Bash
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virtualenv --python=python3 --system-site-packages msspec_venv
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```
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to activate the virtual environment (if you are in the folder where you created "msspec\_venv"):
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```Bash
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source ./msspec_venv/bin/activate
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```
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Now you can build the program, go in the source folder
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```Bash
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cd msspec_python3/src
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```
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Install the python package dependencies.
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```Bash
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pip install -r setup_requirements.txt
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pip install -r requirements.txt
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```
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You need to compile the fortran libs. This is done by the scons (Software Construction) program
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```Bash
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scons
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```
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Finally, install the package in develop mode:
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```Bash
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pip install -e .
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```
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That's all. All you need to do each time you want to work with msspec is activating the virtual environment
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