Compare commits

...

44 Commits

Author SHA1 Message Date
kmdunseath 6da19024ad Small cosmetic changes 2023-06-29 13:51:23 +02:00
kmdunseath deb350a520 For spectrocopy EIG, added the possibility of using Arnoldi iteration techniques
implemented in ARPACK for calculating a subset of eigenvalues rather than all of
them or just the largest one.

This is invoked by setting algorithm='arnoldi' in the constructor MSSPEC.

    calc = MSSPEC(spectroscopy='EIG', algorithm='arnoldi')

This version finds NEV eigenvalues with the largest magnitudes. The value of
NEV is set in the code to be 2% of the total number. The algorithm also sets
the number of basis vectors, NCV, to be 2*NEV. Options for allowing the user
to set these values as well as other convergence criteria should be added in
later versions.

Files src/msspec/calculator.py and src/msspec/parameters.py have been modified
to accept algorithm='arnoldi'.

A new directory, src/msspec/spec/fortran/eig/ar, has been created and contains
various Fortran files implementing the Arnoldi iteration. Some files are written
in Fortran90 free-format and use some features of the Fortran 2003 standard.

Compilation requires the ARPACK library to be installed and accessible using -larpack

Compilation rules and options have been introduced/modified where necessary in the
files src/options.mk, src/msspec/spec/fortran/Makefile and
src/msspec/spec/fortran/eig_ar.mk

This version has been tested for the CaO example.
2023-06-29 11:11:49 +02:00
kmdunseath f5a2b9779c Modifications to build msspec-python3
- Makefile: using python -m venv to create the virtual environment
 - src/options.mk: set PYTHON to python3; add filters and rules to treat .f90 files
 - src/pip.freeze: add packages wheel and wxPython
2023-06-29 10:50:34 +02:00
Sylvain Tricot 5f19198dec Remove the creation of output file "fort.354"
This file was created for debugging purposes by the renormalization
procedure. But since it had one line per diffusion path, its size
could rapidly become an issue.
The line is simply commented in the code.
2023-06-19 14:50:08 +02:00
Sylvain Tricot 893d012c99 Remove stderr output for 'git describe' call 2023-06-02 11:33:22 +02:00
Sylvain Tricot d61408e594 Remove 'print' calls in version.py 2023-06-02 11:14:21 +02:00
Sylvain Tricot 3811c4baf0 Restore pip.freeze and setup.py in src/
Since those files are still required for an
editable install (make devel)
2023-06-02 11:03:08 +02:00
Sylvain Tricot 7d9662ae37 Merge branch 'devel' of https://git.ipr.univ-rennes1.fr/epsi/msspec_python3 into devel
Required since changes were made uptream while trying to push local changes
2023-06-02 10:53:38 +02:00
Sylvain Tricot 5b76612c72 Change the version mechanism.
setuptools_scm is no longer used to get the version
of msspec. This commit is an attempt to sanitize this.
2023-06-02 10:49:09 +02:00
kmdunseath cb0b432041 Added file src/msspec/spec/fortran/eig/common/save_eigenvalues.f
which writes the eigenvalues to a fortran stream file called
eigenvalues.dat, facilitating reading by a python script.

Added call to save_eigenvalues in src/msspec/spec/fortran/eig/common/eig_mat_ms.f
2023-06-01 15:52:11 +02:00
Sylvain Tricot 39ba8c3983 Merge tag '1.7.post13' into devel
1.7.post13
2023-03-29 11:45:17 +02:00
Sylvain Tricot f94426476d Add multistage build
To reduce the size of the Docker image. We use a multistage
build based on an alpine distro, the size is reduced by a
factor of 7.
2022-10-27 16:06:51 +02:00
Sylvain Tricot d1e52eae86 Switch to pyprojetc.toml
The packaging uses now the modern pyproject.toml and setup.cfg files.
The setup.py is deprecated.
2022-10-27 14:45:38 +02:00
Sylvain Tricot 6f254e688e Change the version mechanism 2022-10-26 17:15:24 +02:00
Sylvain Tricot 6785e7228a Fix attrdict issue when building wxPython>=4.2.0
When building wxPython, the "attrdict" package is needed, but is
now incompatible with Python > 3.10, due to the "collections" package.
The workaround is to ship a patched version of "attrdict" along with
msspec since "attrdict" isn't developped anylonger.
2022-10-25 16:24:23 +02:00
Sylvain Tricot c455b3bdfa Fix bug with matplotlib > 3.4.3
In newer versions of matplotlib, the autoscale was not working.
Changing "autoscale" to False simply fixes the bug...
2022-10-25 16:21:38 +02:00
Sylvain Tricot bbc8a92382 Merge tag '1.7.post12' into devel
1.7.post12
2022-10-06 18:27:24 +02:00
Sylvain Tricot c0d5e97b35 Merge tag '1.7.post11' into devel
1.7.post11
2022-10-05 13:55:33 +02:00
Sylvain Tricot adb73f7fd8 Merge branch 'feature/polarization' into devel
epsi-builds/msspec_python3/pipeline/head There was a failure building this commit Details
2022-02-15 17:30:12 +01:00
Sylvain Tricot 9787e99d2e Added the binding for polarization keyword.
The polarization keyword may be None, 'linear_qOz', 'linear_xOy' or
'circular'. The IPOL parameter in spec.dat is set accordingly to
0, 1, -1 or 2 respectively.
2022-02-15 15:37:28 +01:00
Sylvain Tricot 4b75be2045 Changed 'python' command in sdist target.
epsi-builds/msspec_python3/pipeline/head There was a failure building this commit Details
The 'python' command might not be the true interpreter. It is
better to use the provided PYTHON_EXE command.
2022-02-15 15:34:30 +01:00
Sylvain Tricot 25fd8114a5 Merge branch 'feature/correlation_expansion' into devel
epsi-builds/msspec_python3/pipeline/head There was a failure building this commit Details
2022-02-15 11:01:22 +01:00
Sylvain Tricot 39074f75b6 Fixed some minor bugs.
epsi-builds/msspec_python3/pipeline/head There was a failure building this commit Details
Fixed some bugs. The correlation expansion version now compiles!
The shared object is imported in the calculator.py module.
2022-02-09 19:08:22 +01:00
Sylvain Tricot 6986dde636 Added main anf Makefile rules for CE. 2022-02-09 19:07:03 +01:00
Sylvain Tricot d09ba1b590 Added main_phd_ns_ce.f
epsi-builds/msspec_python3/pipeline/head There was a failure building this commit Details
This file was updated to be compatible with Python bindings.
The begining of the file is identical to the series expansion
version, so it was copied from there.
2022-02-09 14:35:26 +01:00
Sylvain Tricot f4f204305e Added lapack_axb.f
This file is the same as for the matrix inversion.
2022-02-09 14:34:52 +01:00
Sylvain Tricot 2b6a8b6e05 Added phddif_ce.f file.
The file was updated to be compatible with Python bindings.
2022-02-09 14:19:30 +01:00
Sylvain Tricot 9ebf6c6bc3 Added coumat.f and treat_phd.f
Those 2 files were copied from the phd_se version since
they are identical.
2022-02-09 14:18:22 +01:00
Sylvain Tricot 998fdbee88 Added ms_cor.f file.
The file ms_cor.f was updated to be compatible with Python
bindings.
2022-02-09 13:46:03 +01:00
Sylvain Tricot b1f34aef6a Added mpis.f file.
The file mpis.f was updated to be compatible with Python
bindings. The module CORREXP_MOD was created and is now
allocated in memalloc/allocation.f. The parameter NLMM was
added to dim_mod.f.
2022-02-09 13:39:28 +01:00
Sylvain Tricot 58e9731ffd Added gaunt_st.f file.
The file gaunt_st.f was updated to be compatible with Python
bindings. The module GAUNT_C was created.
2022-02-09 13:24:07 +01:00
Sylvain Tricot 0b889681d1 Added corexp1.f file
The file corexp1.f was updated to be compatible with Python
bindings.
2022-02-09 13:11:17 +01:00
Sylvain Tricot f262f96004 Added and updated corexp.f
The file corexp.f was updated to be compatible with Python
bindings.
2022-02-09 13:08:06 +01:00
Sylvain Tricot e3c0accbcb Added and updated coefpq.f
The file coefpq.f was updated to be compatible with Python
bindings. The common /Q_ARRAY/ was refactored as a module in
memalloc/modules.f and allocated in memalloc/allocation.f.
2022-02-09 12:22:05 +01:00
Sylvain Tricot 39eb3dc9d8 Added and updated cmngr.f
The file cmngr.f was updated to be compatible with Python bindings.
2022-02-09 12:02:24 +01:00
Sylvain Tricot 1dba5cbe47 Added files common to SE and CE.
5 files are common to Series Expansion and Correlation Expansion
algortithms. They are now in the dedicated phd_ce_noso_nosp_nosym
folder.
2022-02-09 11:43:35 +01:00
Sylvain Tricot ca1fd04163 Modified cut_cylinder and cut_plane functions.
epsi-builds/msspec_python3/pipeline/head There was a failure building this commit Details
cut_cylinder and cut_plane functions were too slow due to
lists modifications in for loops. Implementation was modified
a bit while keeping the same API.
For now, cutting a cylinder for an axis 'x' or 'y' is not supported
anymore.
2022-02-08 15:20:32 +01:00
Sylvain Tricot a657b1874e Changed memory requirements. 2022-02-08 15:19:26 +01:00
Sylvain Tricot 1fd9509608 Added the malloc keyword.
In the stereo scan, the malloc keyword is now specified.
2022-02-08 14:39:03 +01:00
Sylvain Tricot 925d694099 Added 'other_parameters' keyword to any scan.
epsi-builds/msspec_python3/pipeline/head There was a failure building this commit Details
This keyword is a dictionary allowing any option
to be passed to Phagen or Spec just before runing
the calculation. It is usefull to pass special options
that are for example set automatically otherwise.
2021-11-30 16:26:10 +01:00
Sylvain Tricot 7567b920a1 Add Lapack/Blas compilation flag. 2021-11-30 16:21:05 +01:00
Sylvain Tricot 369e743197 Removed all f-strings.
By replacing f-strings by the standard ".format" call,
the package can be now compatible with python3.5
2021-09-27 17:49:48 +02:00
Sylvain Tricot ec0fc248ce Merge branch 'master' into devel
epsi-builds/msspec_python3/pipeline/head This commit looks good Details
2021-09-27 16:19:24 +02:00
Sylvain Tricot 0d6db43597 Removed 'syncing website' stage
epsi-builds/msspec_python3/pipeline/head This commit looks good Details
In the CI, the website is not uploaded at the
end of the process for the 'devel' branch.
2021-09-27 14:33:17 +02:00
62 changed files with 13028 additions and 178 deletions

View File

@ -1,24 +1,102 @@
# Get the base Python image
FROM python:latest
FROM alpine:edge AS builder
# Variables
ARG branch="devel"
ARG login="" password=""
ARG folder=/opt/msspec user=msspec
# Install system dependencies
RUN apt-get update && apt-get install -y virtualenv gfortran libgtk-3-dev nano
# Add a non-privileged user
RUN useradd -ms /bin/bash -d /opt/msspec msspec
# Set the working directory in the container
USER msspec
RUN mkdir -p /opt/msspec/code
WORKDIR /opt/msspec/code
# tools
RUN apk add bash git make gfortran python3
# headers
RUN apk add python3-dev lapack-dev musl-dev
# python packages
RUN apk add py3-virtualenv py3-pip py3-numpy-dev py3-h5py py3-lxml py3-matplotlib py3-numpy py3-pandas py3-cairo py3-scipy py3-setuptools_scm
RUN apk add --no-cache -X http://dl-cdn.alpinelinux.org/alpine/edge/testing py3-wxpython
RUN pip install ase pint terminaltables ipython
# for GUI
RUN apk add ttf-droid adwaita-icon-theme
RUN apk add build-base
# Fetch the code
RUN git clone https://git.ipr.univ-rennes1.fr/epsi/msspec_python3.git .
#COPY --chown=msspec:msspec . .
RUN mkdir -p ${folder}/code
WORKDIR ${folder}/code
RUN git clone --branch ${branch} https://${login}:${password}@git.ipr.univ-rennes1.fr/epsi/msspec_python3.git .
# Build
RUN make pybinding NO_VENV=1 PYTHON=python3 VERBOSE=1
RUN make -C src sdist PYTHON=python3 NO_VENV=1 VENV_PATH=${folder}/.local/src/msspec_venv && \
pip install src/dist/msspec*tar.gz
# Add a non-privileged user
RUN adduser -D -s /bin/bash -h ${folder} ${user}
# Set the working directory in the container
USER ${user}
RUN virtualenv --system-site-packages ${folder}/.local/src/msspec_venv
RUN make -C src frontend PYTHON=python3 NO_VENV=1 VENV_PATH=${folder}/.local/src/msspec_venv
FROM alpine:edge
# Variables
ARG folder=/opt/msspec user=msspec
# Install system dependencies
RUN apk add --no-cache -X http://dl-cdn.alpinelinux.org/alpine/edge/testing \
# hdf5-hl cairo openblas lapack libxml2 libxslt libzlf wxwidgets-gtk3 openjpeg libimagequant \
nano \
py3-virtualenv \
lapack \
bash \
# git \
# make \
# gfortran \
python3 \
# ttf-droid \
ttf-liberation \
adwaita-xfce-icon-theme \
# python3-dev \
# lapack-dev \
# musl-dev \
# py3-virtualenv \
py3-pip \
# py3-numpy-dev \
py3-h5py \
py3-lxml \
py3-matplotlib \
py3-numpy \
py3-pandas \
py3-cairo \
py3-scipy \
py3-setuptools_scm \
py3-wxpython \
&& pip install \
ase \
pint \
terminaltables \
ipython \
&& pip cache purge \
# Add a non-privileged user
&& adduser -D -s /bin/bash -h ${folder} ${user}
# Set the working directory in the container
USER ${user}
WORKDIR ${folder}
# Install msspec
ENV PATH=/opt/msspec/.local/bin:$PATH
RUN make install VERBOSE=1
#COPY --from=builder ${folder}/.local ${folder}/.local
#COPY --from=builder /usr/lib/python3.10/site-packages /usr/lib/python3.10/site-packages
COPY --from=builder ${folder}/code/src/dist/msspec*tar.gz msspec.tar.gz
RUN virtualenv --system-site-packages .local/src/msspec_venv && \
. .local/src/msspec_venv/bin/activate && \
pip install msspec.tar.gz && \
rm -f msspec.tar.gz && \
mkdir -p .local/bin
COPY --from=builder ${folder}/.local/bin/msspec .local/bin/msspec
ENV PATH=${folder}/.local/bin:$PATH
# Run the msspec frontend command on startup
ENTRYPOINT ["msspec"]

4
Jenkinsfile vendored
View File

@ -13,9 +13,9 @@ pipeline {
}
stage('Syncing website...') {
steps {
// echo 'Syncing website...'
echo 'Syncing website only in master branch, not here in devel branch...'
// sh 'rm -rf $HOME/www/*'
sh 'cp -a ./doc/build/html/* $HOME/www/'
// sh 'cp -a ./doc/build/html/* $HOME/www/'
}
}

View File

@ -1,7 +1,7 @@
include src/options.mk
.PHONY: pybinding install devel venv doc clean
.PHONY: pybinding install devel venv doc clean _attrdict
pybinding:
@ -10,20 +10,23 @@ pybinding:
venv:
ifeq ($(NO_VENV),0)
@virtualenv --python=$(PYTHON_EXE) --prompt="(msspec-$(VERSION)) " $(VENV_PATH)
$(INSIDE_VENV) \
wget https://bootstrap.pypa.io/get-pip.py && \
python get-pip.py && \
pip install --upgrade setuptools && \
pip install -r src/pip.freeze && \
rm -f get-pip.py
# @virtualenv --python=$(PYTHON_EXE) --prompt="(msspec-$(VERSION)) " $(VENV_PATH)
$(PYTHON) -m venv $(VENV_PATH)
$(INSIDE_VENV) python -m ensurepip --upgrade
$(INSIDE_VENV) pip install -r src/pip.freeze
endif
# wget https://bootstrap.pypa.io/get-pip.py && \
# python get-pip.py && \
# rm -f get-pip.py
# pip install --upgrade setuptools && \
# pip install -r src/pip.freeze && \
install: venv pybinding wx
@+$(INSIDE_VENV) $(MAKE) -C src sdist
@+$(INSIDE_VENV) $(MAKE) -C src frontend
@+$(INSIDE_VENV) pip install src/dist/msspec-$(VERSION).tar.gz
@+$(INSIDE_VENV) pip install --force-reinstall src/dist/msspec-$(VERSION)*.whl
@echo "Do not forget to check that $(INSTALL_PREFIX)/bin is set in your \$$PATH"
@ -37,20 +40,28 @@ light: venv
@$(INSIDE_VENV) pip install src/
_build_wx/wxPython.target:
_attrdict:
# Check if virtualenv python version > 3.3.0
# If so, install the patched version of attrdict used to build the version 4.2.0 of wxPython
@$(INSIDE_VENV) if `python -c "import sys; exit(sys.version_info > (3,3))"`; then \
pip install --no-cache attrdict; \
else \
pip install thirdparty/attrdict-2.0.1.tar.gz; \
fi
_build_wx/wxPython.target: _attrdict
@$(INSIDE_VENV) echo "Building wxPython for your `python --version 2>&1` under Linux $(DISTRO_RELEASE)..."
# Create a folder to build wx into
@mkdir -p _build_wx
@$(INSIDE_VENV) pip install attrdict sip
# TODO: attrdict is no longer compatible with collections package. The build will fail
# download the wheel or the source if it cannot find a wheel
@$(INSIDE_VENV) cd _build_wx && pip download -f https://extras.wxpython.org/wxPython4/extras/linux/gtk3/$(DISTRO_RELEASE) wxPython
$(INSIDE_VENV) cd _build_wx && pip download -f https://extras.wxpython.org/wxPython4/extras/linux/gtk3/$(DISTRO_RELEASE) wxPython
# Build the source if a tar.gz was downloaded
@$(INSIDE_VENV) cd _build_wx && \
if [ -e wxPython*.tar.gz ]; then \
tar -x --skip-old-files -vzf wxPython*.tar.gz; \
cd `ls -d wxPython*/`; \
pip install requests; \
pip install requests sip; \
python build.py dox etg --nodoc sip build bdist_wheel; \
ln -sf `readlink -f dist/wxPython*.whl` ../; \
fi;

View File

@ -18,7 +18,8 @@ for zi, z0 in enumerate(all_z):
calc.set_atoms(cluster)
# Compute
data = calc.get_theta_phi_scan(level='1s', kinetic_energy=723, data=data)
data = calc.get_theta_phi_scan(level='1s', kinetic_energy=723, data=data,
malloc={'NPH_M': 8000})
dset = data[-1]
dset.title = "{:d}) z = {:.2f} angstroms".format(zi, z0)

View File

@ -1,6 +0,0 @@
recursive-include msspec *.so
recursive-include . SConstruct
include setup_requirements.txt
include requirements.txt
include pip.freeze
include VERSION

View File

@ -9,16 +9,15 @@ sdist: dist/msspec-$(VERSION).tar.gz
frontend: $(INSTALL_PREFIX)/bin/msspec
dist/msspec-$(VERSION).tar.gz: VERSION
dist/msspec-$(VERSION).tar.gz: msspec/VERSION
@echo "Creating Python source distribution..."
@python setup.py sdist
@+$(INSIDE_VENV) pip install build && python -m build
$(INSTALL_PREFIX)/bin/msspec: msspec.sh.template VERSION
$(INSTALL_PREFIX)/bin/msspec: msspec.sh.template msspec/VERSION
@echo "Installing frontend command..."
@mkdir -p $(dir $@)
@cat $< | sed -e 's/__VERSION__/$(VERSION)/' -e 's#__VENV_PATH__#$(VENV_PATH)#' > $@
#@cat $< | sed 's/__VERSION__/$(VERSION)/' > $@
@cat $< | sed -e 's#__VENV_PATH__#$(VENV_PATH)#' > $@
@chmod 755 $@
@ -26,7 +25,7 @@ pybinding:
@echo "Building Python binding for phagen and spec..."
@+$(MAKE) -C msspec/phagen/fortran all
@+$(MAKE) -C msspec/spec/fortran all
@echo "$(VERSION)" > VERSION
@echo "$(VERSION)" > msspec/VERSION
results: msspec/results.txt
@ -54,7 +53,7 @@ clean::
# remove previous sdist
@rm -rf dist
@rm -rf *.egg*
@rm -f VERSION
@rm -f msspec/VERSION
help:

View File

@ -2,12 +2,11 @@
SCRIPT_PATH="$0"
SCRIPT_NAME=$(basename "$SCRIPT_PATH")
VERSION="__VERSION__"
VENV_PATH="__VENV_PATH__"
# Check venv path
if ! [ -d "$VENV_PATH" ]; then
echo "ERROR: Unable to find version $VERSION of msspec!!"
echo "ERROR: Unable to find msspec!!"
exit 1
fi
@ -15,6 +14,10 @@ launch_script() {
. "$VENV_PATH/bin/activate" && python "$@"
}
show_version () {
. "$VENV_PATH/bin/activate" && python -c "import msspec; print(msspec.__version__)"
}
show_help () {
echo "Usage: 1) $SCRIPT_NAME -p [PYTHON OPTIONS] SCRIPT [ARGUMENTS...]"
echo " 2) $SCRIPT_NAME [-l FILE | -i | -h]"
@ -92,7 +95,7 @@ while getopts "hvil:p:eu" option; do
;;
u) uninstall
;;
v) echo $VERSION
v) show_version
;;
*|h) show_help
;;

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -16,8 +17,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/__init__.py
# Last modified: ven. 10 avril 2020 17:22:12
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
import ase

View File

@ -1,5 +1,25 @@
#!/usr/bin/env python
# coding: utf-8
# vim: set et ts=4 sw=4 fdm=indent mouse=a cc=+1 tw=80:
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
# This file is part of msspec.
#
# msspec is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# msspec is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/calcio.py
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
"""
Module calcio
@ -910,7 +930,7 @@ class SpecIO(object):
if content != old_content:
with open(filename, 'w') as fd:
fd.write(content)
LOGGER.debug(f"Writing Spec input file written in {filename}")
LOGGER.debug("Writing Spec input file written in {}".format(filename))
modified = True
return modified
@ -1255,13 +1275,13 @@ class CompCurveIO(object):
data = []
for i in range(1, 13):
#data.append(np.loadtxt(prefix + f'{i:02d}' + '.txt')[-1])
results = np.loadtxt(prefix + f'{i:02d}' + '.txt')
results = np.loadtxt(prefix + '{:02d}'.format(i) + '.txt')
results = results.reshape((-1, 2))
data.append(results[index,1])
suffix = 'ren'
exp = {'int': None, 'ren': None, 'chi': None, 'cdf': None}
exp_ren = np.loadtxt(os.path.join('exp', 'div',
f'experiment_{suffix}.txt'))
'experiment_{}.txt'.format(suffix)))
calc_ren = np.loadtxt(os.path.join('calc', 'div',
f'calculation{index:d}_{suffix}.txt'))
'calculation{:d}_{}.txt'.format(index,suffix)))
return data, exp_ren, calc_ren

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -16,8 +17,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/calculator.py
# Last modified: ven. 10 avril 2020 17:19:24
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Tue, 25 Oct 2022 16:21:38 +0200
# Committed by : Sylvain Tricot <sylvain.tricot@univ-rennes1.fr> 1666707698 +0200
"""
@ -94,8 +95,10 @@ from msspec.parameters import TMatrixParameters
from msspec.phagen.fortran.libphagen import main as do_phagen
from msspec.spec.fortran import _eig_mi
from msspec.spec.fortran import _eig_pw
from msspec.spec.fortran import _eig_ar
from msspec.spec.fortran import _phd_mi_noso_nosp_nosym
from msspec.spec.fortran import _phd_se_noso_nosp_nosym
from msspec.spec.fortran import _phd_ce_noso_nosp_nosym
from msspec.spec.fortran import _comp_curves
from msspec.utils import get_atom_index
@ -404,6 +407,8 @@ class _MSCALCULATOR(Calculator):
do_spec = _phd_se_noso_nosp_nosym.run
elif self.global_parameters.algorithm == 'inversion':
do_spec = _phd_mi_noso_nosp_nosym.run
elif self.global_parameters.algorithm == 'correlation':
do_spec = _phd_ce_noso_nosp_nosym.run
else:
LOGGER.error("\'{}\' spectroscopy with \'{}\' algorithm is not "
"an allowed combination.".format(self.global_parameters.spectroscopy,
@ -414,6 +419,8 @@ class _MSCALCULATOR(Calculator):
do_spec = _eig_mi.run
elif self.global_parameters.algorithm == 'power':
do_spec = _eig_pw.run
elif self.global_parameters.algorithm == 'arnoldi':
do_spec = _eig_ar.run
else:
LOGGER.error("\'{}\' spectroscopy with \'{}\' algorithm is not "
"an allowed combination.".format(self.global_parameters.spectroscopy,
@ -745,7 +752,7 @@ class _PED(_MSCALCULATOR):
view = dset.add_view("E = {:.2f} eV".format(ke), title=title,
xlabel=xlabel, ylabel=ylabel,
projection='stereo', colorbar=True, autoscale=True)
projection='stereo', colorbar=True, autoscale=False)
view.select('theta', 'phi', 'cross_section')
@ -982,8 +989,8 @@ class _EIG(_MSCALCULATOR):
_MSCALCULATOR.__init__(self, spectroscopy='EIG', algorithm=algorithm,
polarization=polarization, dichroism=dichroism,
spinpol=spinpol, folder=folder, txt=txt)
if algorithm not in ('inversion', 'power'):
LOGGER.error("Only the 'inversion' or the 'power' algorithms "
if algorithm not in ('inversion', 'power', 'arnoldi'):
LOGGER.error("Only the 'inversion', 'power' or 'arnoldi' algorithms "
"are supported in EIG spectroscopy mode")
exit(1)
self.iodata = iodata.Data('EIG Simulation')
@ -1132,7 +1139,7 @@ class RFACTOR(object):
for i in range(noif):
X, Y = args[2*i], args[2*i+1]
fname = os.path.join('calc',
f'calculation{self.stack_count:d}.txt')
'calculation{:d}.txt'.format(self.stack_count))
# And save to the working space
np.savetxt(fname, np.transpose([X, Y]))
self.stack_count += 1
@ -1140,7 +1147,7 @@ class RFACTOR(object):
# Update the list of input calculation files
self._params.calc_filename = []
for i in range(self.stack_count):
fname = os.path.join('calc', f'calculation{i:d}.txt')
fname = os.path.join('calc', 'calculation{:d}.txt'.format(i))
self._params.calc_filename.append(fname)
# Write the input file
@ -1235,23 +1242,23 @@ class RFACTOR(object):
dset_values.x, dset_values.yref = exp_data.T
# Append the calculated values
ycalc = calc_data[:,1]
dset_values.add_columns(**{f"calc{i:d}": ycalc})
dset_rfc.add_columns(**{f'variable_set{i:d}': rfc})
dset_values.add_columns(**{"calc{:d}".format(i): ycalc})
dset_rfc.add_columns(**{'variable_set{:d}'.format(i): rfc})
# Plot the curves
view_values.select('x', 'yref', legend='Reference values')
title = ''
for k,v in self.best_values.items():
title += f'{k}={v} '
view_values.select('x', f"calc{self.index:d}",
title += '{}={} '.format(k, v)
view_values.select('x', "calc{:d}".format(self.index),
legend="Best calculated values")
view_values.set_plot_options(title=title)
view_results.select('counts')
for i in range(self.stack_count):
view_rfc.select('rfactor_number', f'variable_set{i:d}',
legend=f"variables set #{i:d}")
view_rfc.select('rfactor_number', 'variable_set{:d}'.format(i),
legend="variables set #{:d}".format(i))
# Save the parameters
for p in self.get_parameters():
bundle = {'group': str(p.group),

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -18,8 +19,8 @@
# along with msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/cli.py
# Last modified: jeu. 04 juin 2020 16:54:12
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
import sys

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -18,8 +19,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/create_tests_results.py
# Last modified: ven. 10 avril 2020 17:29:16
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
from msspec.tests import create_tests_results

View File

@ -1,5 +1,24 @@
# -*- encoding: utf-8 -*-
# vim: set fdm=indent ts=4 sw=4 sts=4 et ai tw=80 cc=+0 mouse=a nu : #
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
# This file is part of msspec.
#
# msspec is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# msspec is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/data/__init__.py
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
from .electron_be import electron_be

View File

@ -1,4 +1,24 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
# This file is part of msspec.
#
# msspec is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# msspec is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/data/electron_be.py
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
"""
Module electron_be

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -16,8 +17,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/iodata.py
# Last modified: ven. 10 avril 2020 17:23:11
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
"""
@ -442,24 +443,24 @@ class DataSet(object):
for k, v in parameters.items():
if k == 'Cluster':
continue
s += f"# {k}:\n"
s += "# {}:\n".format(k)
if not(isinstance(v, list)):
v = [v,]
for p in v:
s += f"# {p['name']} = {p['value']} {p['unit']}\n"
s += "# {} = {} {}\n".format(p['name'], p['value'], p['unit'])
return s
colnames = self.columns()
with open(filename, mode) as fd:
# write the date and time of export
now = datetime.now()
fd.write(f"# Data exported on {now}\n")
fd.write("# Data exported on {}\n".format(now))
fd.write(rule)
# Append notes
fd.write("# NOTES:\n")
for line in self.notes.split('\n'):
fd.write(f"# {line}\n")
fd.write("# {}\n".format(line))
fd.write(rule)
# Append parameters

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -15,9 +16,9 @@
# You should have received a copy of the GNU General Public License
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/iodata.py
# Last modified: ven. 10 avril 2020 17:23:11
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Source file : src/msspec/iodata_gi.py
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
"""
@ -491,24 +492,24 @@ class DataSet(object):
for k, v in parameters.items():
if k == 'Cluster':
continue
s += f"# {k}:\n"
s += "# {}:\n".format(k)
if not(isinstance(v, list)):
v = [v,]
for p in v:
s += f"# {p['name']} = {p['value']} {p['unit']}\n"
s += "# {} = {} {}\n".format(p['name'], p['value'], p['unit'])
return s
colnames = self.columns()
with open(filename, mode) as fd:
# write the date and time of export
now = datetime.now()
fd.write(f"# Data exported on {now}\n")
fd.write("# Data exported on {}\n".format(now))
fd.write(rule)
# Append notes
fd.write("# NOTES:\n")
for line in self.notes.split('\n'):
fd.write(f"# {line}\n")
fd.write("# {}\n".format(line))
fd.write(rule)
# Append parameters

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -15,9 +16,9 @@
# You should have received a copy of the GNU General Public License
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/iodata.py
# Last modified: ven. 10 avril 2020 17:23:11
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Source file : src/msspec/iodata_wx.py
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
"""
@ -437,24 +438,24 @@ class DataSet(object):
for k, v in parameters.items():
if k == 'Cluster':
continue
s += f"# {k}:\n"
s += "# {}:\n".format(k)
if not(isinstance(v, list)):
v = [v,]
for p in v:
s += f"# {p['name']} = {p['value']} {p['unit']}\n"
s += "# {} = {} {}\n".format(p['name'], p['value'], p['unit'])
return s
colnames = self.columns()
with open(filename, mode) as fd:
# write the date and time of export
now = datetime.now()
fd.write(f"# Data exported on {now}\n")
fd.write("# Data exported on {}\n".format(now))
fd.write(rule)
# Append notes
fd.write("# NOTES:\n")
for line in self.notes.split('\n'):
fd.write(f"# {line}\n")
fd.write("# {}\n".format(line))
fd.write(rule)
# Append parameters

View File

@ -1,6 +1,24 @@
# coding: utf8
# -*- encoding: future_fstrings -*-
# vim: set et sw=4 ts=4 nu tw=79 cc=+1:
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
# This file is part of msspec.
#
# msspec is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# msspec is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/looper.py
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
from collections import OrderedDict
from functools import partial
@ -21,7 +39,7 @@ class Variable:
self.doc = doc
def __repr__(self):
return f"<Variable(\'{self.name}\')>"
return "<Variable(\'{}\')>".format(self.name)
class Sweep:
def __init__(self, key, comments="", unit=None,

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -18,8 +19,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/misc.py
# Last modified: ven. 10 avril 2020 17:30:42
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
"""

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -18,8 +19,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/parameters.py
# Last modified: ven. 10 avril 2020 17:31:50
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Tue, 15 Feb 2022 15:37:28 +0100
# Committed by : Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>
"""
@ -769,7 +770,8 @@ class GlobalParameters(BaseParameters):
Parameter('algorithm', types=str, allowed_values=('expansion',
'inversion',
'correlation',
'power'),
'power',
'arnoldi'),
default='expansion', doc="""
You can choose the algorithm used for the computation of the scattering path operator.
@ -777,6 +779,7 @@ class GlobalParameters(BaseParameters):
- '**expansion**', for the Rehr-Albers series expansion
- '**correlation**', for the correlation-expansion algorithm
- '**power**', for the power method approximation scheme (only for spectroscopy='EIG')
- '**arnoldi**', for computing multiple eigenvalues using Arnoldi iteration (only for spectroscopy='EIG')
The series expansion algorithm is well suited for high energy since the number of terms
required decreases as the energy increases. The exact solution is obtained by the matrix inversion
@ -838,6 +841,17 @@ class GlobalParameters(BaseParameters):
self.phagen_parameters.calctype = phagen_calctype
self.spec_parameters.calctype_spectro = spec_calctype
def bind_polarization(self, p):
if p.value is None:
ipol = 0
elif p.value == 'linear_qOz':
ipol = 1
elif p.value == 'linear_xOy':
ipol = -1
elif p.value == 'circular':
ipol = 2
self.spec_parameters.calctype_ipol = ipol
def bind_spinpol(self, p):
if p.value == True:
LOGGER.error('Spin polarization is not yet enabled in the Python version.')
@ -2012,20 +2026,20 @@ class CompCurveGeneralParameters(BaseParameters):
value = p.allowed_values.index(p.value)
self.compcurve_parameters.general_norm = value
LOGGER.info("Curve Comparison: Normalization mode set to "
f"\"{p.value}\"")
"\"{}\"".format(p.value))
def bind_rescale(self, p):
self.compcurve_parameters.general_iscale = int(p.value)
state = "deactivated"
if p.value:
state = "activated"
LOGGER.info(f"Curve Comparison: Rescaling of data {state}")
LOGGER.info("Curve Comparison: Rescaling of data {}".format(state))
def bind_function(self, p):
value = p.allowed_values.index(p.value)
self.compcurve_parameters.general_icur = value
LOGGER.info("Curve Comparison: Type of data used for comparison "
f"set to \"{p.value}\"")
"set to \"{}\"".format(p.value))

View File

@ -1,6 +1,6 @@
.PHONY: all phd_se phd_mi eig_mi eig_pw comp_curve clean
.PHONY: all phd_se phd_mi phd_ce eig_mi eig_pw eig_ar comp_curve clean
all: phd_se phd_mi eig_mi eig_pw comp_curve
all: phd_se phd_mi phd_ce eig_mi eig_pw eig_ar comp_curve
phd_se:
@+$(MAKE) -f phd_se_noso_nosp_nosym.mk all
@ -8,18 +8,26 @@ phd_se:
phd_mi:
@+$(MAKE) -f phd_mi_noso_nosp_nosym.mk all
phd_ce:
@+$(MAKE) -f phd_ce_noso_nosp_nosym.mk all
eig_mi:
@+$(MAKE) -f eig_mi.mk all
eig_pw:
@+$(MAKE) -f eig_pw.mk all
eig_ar:
@+$(MAKE) -f eig_ar.mk all
comp_curve:
@+$(MAKE) -f comp_curve.mk all
clean::
@+$(MAKE) -f phd_se_noso_nosp_nosym.mk $@
@+$(MAKE) -f phd_mi_noso_nosp_nosym.mk $@
@+$(MAKE) -f phd_ce_noso_nosp_nosym.mk $@
@+$(MAKE) -f eig_mi.mk $@
@+$(MAKE) -f eig_pw.mk $@
@+$(MAKE) -f eig_ar.mk $@
@+$(MAKE) -f comp_curve.mk $@

View File

@ -0,0 +1,250 @@
!==============================================================================!
module arnoldi_mod
!==============================================================================!
implicit none
private
!
integer, parameter :: sp = kind(1.0)
integer, parameter :: dp = kind(1.0d0)
integer, parameter :: zp = kind((0.0d0,0.0d0))
!
complex(zp), parameter :: one = complex(1.0d0, 0.0d0)
complex(zp), parameter :: zero = complex(0.0d0, 0.0d0)
!
! Public procedures
!
public :: arnoldi_iteration
!
! Private data
!
! ARPACK's debug common block
!
integer :: logfil = 6, ndigit = -3, mcaupd = 1
integer :: mgetv0 = 0, msaupd = 0, msaup2 = 0, msaitr = 0, mseigt = 0, &
msapps = 0, msgets = 0, mseupd = 0, mnaupd = 0, mnaup2 = 0, &
mnaitr = 0, mneigh = 0, mnapps = 0, mngets = 0, mneupd = 0, &
mcaup2 = 0, mcaitr = 0, mceigh = 0, mcapps = 0, mcgets = 0, &
mceupd = 0
!
common /debug/ logfil, ndigit, mgetv0, msaupd, msaup2, msaitr, mseigt, &
msapps, msgets, mseupd, mnaupd, mnaup2, mnaitr, mneigh, &
mnapps, mngets, mneupd, mcaupd, mcaup2, mcaitr, mceigh, &
mcapps, mcgets, mceupd
!==============================================================================!
contains
!==============================================================================!
! Public procedures
!==============================================================================!
subroutine arnoldi_iteration (ndim, a, nev, d)
!
! Use ARPACK routines to find a few eigenvalues (lambda) and corresponding
! eigenvectors (x) for the standard eigenvalue problem:
!
! A*x = lambda*x
!
! where A is a general NDIM by NDIM complex matrix
!
! This subroutine is based on an ARPACK test program adapted by Logan Boudet
! as part of his M1 project in Rennes in 2022.
!
integer, intent(in) :: ndim
complex(zp), intent(in) :: a(:,:)
integer, intent(inout) :: nev ! number of eigenvalues required
complex(zp), intent(out) :: d(:) ! vector of required eigenvalues
!
! Local data
!
character(1), parameter :: bmat = "I" ! standarg eigenvalue problem
character(2), parameter :: which = "LM" ! find NEV eigenvalues of
! ! largest magnitude
!
integer :: ido, ierr, info, j, lworkl, nconv, ncv
integer :: iparam(11)
integer :: ipntr(14)
real(dp) :: tol
complex(zp) :: sigma
logical :: rvec
!
real(dp), allocatable :: rd(:,:)
real(dp), allocatable :: rwork(:)
complex(zp), allocatable :: ax(:)
complex(zp), allocatable :: resid(:)
complex(zp), allocatable :: v(:,:)
complex(zp), allocatable :: workd(:)
complex(zp), allocatable :: workev(:)
complex(zp), allocatable :: workl(:)
logical, allocatable :: select(:)
!
! External BLAS/LAPACK functions used
!
real(dp), external :: dznrm2, dlapy2
!
!
write(6,*)
write(6,*) "----------------- BEGIN OF ARNOLDI ITERATION -----------------"
!
! NCV is is the largest number of basis vectors that will be used in the
! Implicitly Restarted Arnoldi Process. Work per major iteration is
! proportional to NDIM*NCV*NCV.
!
! Note: we must have NCV >= NEV + 2, and preferably NCV >= 2*NEV
!
! ncv = max(ceiling(1.125*nev + 15), nev+3)
ncv = 2*nev
!
iparam(11) = 0
ipntr(14) = 0
!
! stopping criteria; machine precision is used if tol <= 0
!
tol = 0.0_dp
!
! Algorithm mode
!
iparam(1) = 1 ! exact shift strategy
iparam(3) = 300 ! maximum number of iterations
iparam(7) = 1 ! use mode1 of ZNAUPD
!
lworkl = ncv*(3*ncv + 5)
allocate(rwork(ncv))
allocate(resid(ndim), v(ndim,ncv))
allocate(workd(3*ndim), workev(2*ncv), workl(lworkl))
allocate(select(ncv))
!
! IDO is the reverse communication parameter used to determine action to be taken
! on return from ZNAUPD. Its initial value must be 0.
!
ido = 0
!
! On entry, INFO == 0 instructs ZNAUPD to use a random starting vector.
! To specify a particular starting vector, set INFO to a non-zero value.
! The required startng vector should then be supplied in RESID.
!
info = 0
!
! Main reverse communication loop
!
do
call znaupd(ido, bmat, ndim, which, nev, tol, resid, ncv, v, ndim, &
iparam, ipntr, workd, workl, lworkl, rwork, info)
if (abs(ido) /= 1) exit
!
! Matrix-vector multiplication y = A*x
! Initial vector x is stored starting at workd(ipntr(1))
! The result y should be stored in workd(ipntr(2))
!
call matvec(a, ndim, ndim, workd(ipntr(1)), workd(ipntr(2)))
!
end do
!
if (info < 0) then
write(6,*)
write(6,*) "Error: znaupd returned info = ", info
write(6,*) "Check the documentation of znaupd for more information"
write(6,*)
stop
end if
!
! No fatal errors, post-process with ZNEUPD to extract computed eigenvalues.
! Eigenvectors may be also computed by setting RVEC = .TRUE.)
!
if (info == 1) then
write(6,*)
write(6,*) "Maximum number of iterations reached."
write(6,*)
else if (info == 3) then
write(6,*)
write(6,*) "No shifts could be applied during implicit Arnoldi update"
write(6,*) "Try increasing NCV."
write(6,*)
end if
!
rvec = .false.
!
call zneupd(rvec, 'A', select, d, v, ndim, sigma, workev, bmat, ndim, &
which, nev, tol, resid, ncv, v, ndim, iparam, ipntr, workd, &
workl, lworkl, rwork, ierr)
!
if (ierr /= 0) then
write(6,*)
write(6,*) "Error: zneupd returned ierr = ", ierr
write(6,*) "Check the documentation of zneupd for more information"
write(6,*)
stop
end if
!
! Eigenvalues are returned in the one dimensional array D and if RVEC == .TRUE.
! the corresponding eigenvectors are returned in the first NCONV == IPARAM(5)
! columns of the two dimensional array V
!
nconv = iparam(5)
!
if (rvec) then
!
! Compute the residual norm || A*x - lambda*x || for the NCONV accurately
! computed eigenvalues and eigenvectors
!
allocate(rd(ncv,3), ax(ndim))
!
do j = 1, nconv
call matvec(a, ndim, ndim, v(:,j), ax)
call zaxpy(ndim, -d(j), v(:,j), 1, ax, 1)
rd(j,1) = real(d(j), dp)
rd(j,2) = aimag(d(j))
rd(j,3) = dznrm2(ndim, ax, 1) / dlapy2(rd(j,1), rd(j,2))
end do
!
call dmout(6, nconv, 3, rd, 2*nev, -6, &
"Ritz values (Real, Imag) and relative residuals")
!
deallocate(rd, ax)
!
end if
!
write(6,*)
write(6,*) "SUMMARY"
write(6,*) "======="
write(6,*)
write(6,*) "Size of the matrix is ", ndim
write(6,*) "The number of Ritz values requested is ", nev
write(6,*) "The number of Arnoldi vectors generated (NCV) is ", ncv
write(6,*) "Portion of the spectrum: ", which
write(6,*) "The number of converged Ritz values is ", nconv
write(6,*) "The number of implicit Arnoldi update iterations taken is ", iparam(3)
write(6,*) "The number of OP*x is ", iparam(9)
write(6,*) "The convergence criterion is ", tol
write(6,*)
!
nev = nconv
!
write(6,*) "------------------ END OF ARNOLDI ITERATION ------------------"
!
deallocate(rwork)
deallocate(resid, v)
deallocate(workd, workev, workl)
deallocate(select)
!
return
end subroutine arnoldi_iteration
!==============================================================================!
! Private procedures
!==============================================================================!
subroutine matvec (a, n, lda, x, y)
!
! Compute the matrix-vector product a*x, storing the result in y
!
complex(zp), intent(in) :: a(:,:)
integer, intent(in) :: n
integer, intent(in) :: lda
complex(zp), intent(in) :: x(*)
complex(zp), intent(out) :: y(*)
!
!
call zgemv('n', n, n, one, a, lda, x, 1, zero, y, 1)
!
return
end subroutine matvec
!==============================================================================!
end module arnoldi_mod
!==============================================================================!

File diff suppressed because it is too large Load Diff

View File

@ -0,0 +1,291 @@
!==============================================================================!
subroutine eig_mat_ar (je, e_kin)
!==============================================================================!
! This subroutine stores the G_o T kernel matrix and computes a subset of the
! the eigenvalues with largest magnitude using Arnoldi iteration methods from
! ARPACK
!
use dim_mod, only: n_gaunt, nl_m
use coor_mod, only: natyp, ncorr, n_prot, sym_at
use outfiles_mod, only: outfile2
use outunits_mod, only: iuo1, iuo2
use trans_mod, only: lmax, vk, tl
!
use arnoldi_mod, only: arnoldi_iteration
!
implicit none
!
integer, parameter :: sp = kind(1.0)
integer, parameter :: dp = kind(1.0d0)
integer, parameter :: cp = kind((0.0,0.0))
integer, parameter :: zp = kind((0.0d0,0.0d0))
!
! Subroutine arguments
!
integer, intent(in) :: je
real(sp), intent(in) :: e_kin
!
! Local data
!
integer, parameter :: ibess = 3
integer, parameter :: nprint = 10
real(dp), parameter :: pi = acos(-1.0_dp)
real(dp), parameter :: small = 0.0001_dp
complex(zp), parameter :: ic = complex(0.0d0,1.0d0)
complex(zp), parameter :: zeroc = complex(0.0d0,0.0d0)
complex(zp), parameter :: four_pi_i = 4.0_dp*pi*ic
!
integer :: jatl, jlin, jtyp, jnum, lj, lmj, mj, nbtypj
integer :: katl, klin, ktyp, knum, lk, lmk, mk, nbtypk
integer :: j, jp, l, lin, l_max, l_min, m
integer :: ndim, n_dot, n_eig, nev, nfin, nltwo, npr, n_xmax
real(sp) :: eig, xj, yj, zj, xmax_l
real(dp) :: attkj, xkj, ykj, zkj, rkj, zdkj, krkj
complex(zp) :: expkj, sum_l, tlk
!
integer, save :: iout2, iout3
!
real(sp), allocatable :: w1(:), w2(:)
real(dp), allocatable :: gnt(:)
complex(zp), allocatable :: hl1(:), sm(:,:), ylm(:,:), w(:)
character(:), allocatable :: outfile, path
!
!
if (je == 1) then
!
! Name of second output file where eigenvalues will be written
!
n_dot = index(outfile2, '.')
outfile = outfile2(1:n_dot)//'egv'
path = outfile2(1:n_dot)//'pth'
open(newunit=iout2, file=outfile, status='unknown')
open(newunit=iout3, file=path, status='unknown')
!
end if
!
! Construction of the multiple scattering kernel matrix G_o T.
! Elements are stored using a linear index LINJ representing (J,LJ)
!
! First compute Go T array dimension
!
jlin = 0
do jtyp = 1, n_prot
nbtypj = natyp(jtyp)
lmj = lmax(jtyp,je)
do jnum = 1, nbtypj
do lj = 0, lmj
do mj = -lj, lj
jlin = jlin + 1
end do
end do
end do
end do
!
ndim = jlin
write(6,*) "GoT matrix SM has dimension ", ndim
!
allocate(sm(ndim,ndim))
sm = zeroc
!
nltwo = 2*nl_m
allocate(ylm(0:nltwo, -nltwo:nltwo))
ylm = zeroc
!
allocate(hl1(0:nltwo))
hl1 = zeroc
!
allocate(gnt(0:n_gaunt))
gnt = 0.0_dp
!
jlin = 0
do jtyp = 1, n_prot
nbtypj = natyp(jtyp)
lmj = lmax(jtyp,je)
do jnum = 1, nbtypj
jatl = ncorr(jnum,jtyp)
xj = sym_at(1,jatl)
yj = sym_at(2,jatl)
zj = sym_at(3,jatl)
do lj = 0, lmj
do mj = -lj, lj
jlin = jlin + 1
!
klin=0
do ktyp = 1, n_prot
nbtypk = natyp(ktyp)
lmk = lmax(ktyp,je)
do knum = 1, nbtypk
katl = ncorr(knum,ktyp)
!
if (katl /= jatl) then
xkj = real(sym_at(1,katl) - xj, dp)
ykj = real(sym_at(2,katl) - yj, dp)
zkj = real(sym_at(3,katl) - zj, dp)
rkj = sqrt(xkj*xkj + ykj*ykj + zkj*zkj)
krkj = real(vk(je), dp)*rkj
attkj = exp(-aimag(cmplx(vk(je)))*rkj)
expkj = (xkj + ic*ykj)/rkj
zdkj = zkj/rkj
call sph_har2(2*nl_m, zdkj, expkj, ylm, lmj+lmk)
call besphe2(lmj+lmk+1, ibess, krkj, hl1)
end if
!
do lk = 0,lmk
l_min = abs(lk-lj)
l_max = lk + lj
tlk = cmplx(tl(lk,1,ktyp,je))
do mk = -lk, lk
klin = klin + 1
!
sm(klin,jlin) = zeroc
sum_l = zeroc
if (katl /= jatl) then
call gaunt2(lk, mk, lj, mj, gnt)
do l = l_min, l_max, 2
m = mj - mk
if (abs(m) <= l) then
sum_l = sum_l + (ic**l)*hl1(l)*ylm(l,m)*gnt(l)
end if
end do
sum_l = sum_l*attkj*four_pi_i
else
sum_l = zeroc
end if
!
sm(klin,jlin) = tlk*sum_l
!
end do
end do
end do
end do
end do
end do
end do
end do
!
deallocate(ylm, hl1, gnt)
!
! Compute subset of eigenvalues of SM using ARPACK
!
! NEV is the number of eigenvalues required, set to 2% of NDIM
!
nev = ceiling(0.02*ndim)
allocate(w(nev))
!
call arnoldi_iteration(ndim, sm, nev, w)
!
deallocate(sm)
!
! Save results to filestream for easy access from python
!
call save_eigenvalues(w, nev, e_kin)
!
! Write results to OUTFILE on unit IOUT2
!
write(iout2,75)
write(iout2,110)
write(iout2,80) e_kin
write(iout2,110)
write(iout2,75)
write(iout2,105)
write(iout2,75)
!
allocate(w1(nev), w2(nev))
!
n_eig = 0
xmax_l = 0.0
n_xmax = 0
do lin = 1, nev
eig = real(abs(w(lin)))
write(iout2,100) real(w(lin)), aimag(w(lin)), eig
if ((eig-xmax_l) > 0.0001) n_xmax = lin
xmax_l = max(xmax_l, eig)
w1(lin) = eig
if (eig > 1.000) then
n_eig = n_eig + 1
end if
end do
!
write(iout2,75)
write(iout2,85) xmax_l
write(iout2,90) n_xmax
write(iout2,95) w(n_xmax)
write(iout2,75)
!
! Summarize results in main output file
!
call ordre(nev, w1, nfin, w2)
!
write(iuo1,5)
write(iuo1,10)
write(iuo1,10)
write(iuo1,15) w2(1)
write(iuo1,20) w2(nfin)
write(iuo1,10)
write(iuo1,10)
!
if (n_eig >= 1) then
if (n_eig == 1) then
write(iuo1,25) ndim
else
write(iuo1,30) n_eig, ndim
end if
end if
!
write(iuo1,65) n_xmax
write(iuo1,70) w(n_xmax)
write(iuo1,10)
write(iout3,100) real(w(n_xmax)), aimag(w(n_xmax))
!
npr = nprint/5
write(iuo1,10)
write(iuo1,10)
write(iuo1,35) 5*npr
write(iuo1,10)
do jp = 0, npr-1
j = 5*jp
write(iuo1,40) w2(j+1), w2(j+2), w2(j+3), w2(j+4), w2(j+5)
enddo
write(iuo1,10)
write(iuo1,10)
write(iuo1,45) w2(1)
write(iuo2,*) e_kin, w2(1)
if (n_eig == 0) then
write(iuo1,50)
else
write(iuo1,55)
end if
write(iuo1,10)
write(iuo1,10)
write(iuo1,60)
!
deallocate(w, w1, w2)
!
return
!
5 format(/,11X,'----------------- EIGENVALUE ANALYSIS ','-----------------')
10 format(11X,'-',54X,'-')
15 format(11X,'-',14X,'MAXIMUM MODULUS : ',F9.6,13X,'-')
20 format(11X,'-',14X,'MINIMUM MODULUS : ',F9.6,13X,'-')
25 format(11X,'-',6X,'1 EIGENVALUE IS > 1 OF A TOTAL OF ',I8,6X,'-')
30 format(11X,'-',4X,I5,' EIGENVALUES ARE > 1 OF A TOTAL OF ',I8,2X,'-')
35 format(11X,'-',11X,'THE ',I3,' LARGEST EIGENVALUES ARE :',11X,'-')
40 format(11X,'-',6X,F7.4,2X,F7.4,2X,F7.4,2X,F7.4,2X,F7.4,5X,'-')
45 format(11X,'-',4X,'SPECTRAL RADIUS OF THE KERNEL MATRIX : ',F8.5,3X,'-')
50 format(11X,'-',5X,'---> THE MULTIPLE SCATTERING SERIES ','CONVERGES',4X,'-')
55 format(11X,'-',10X,'---> NO CONVERGENCE OF THE MULTIPLE',9X,'-',/,11X,'-', &
18X,'SCATTERING SERIES',19X,'-')
60 format(11X,'----------------------------------------','----------------',/)
65 format(11X,'-',5X,' LABEL OF LARGEST EIGENVALUE : ',I5,8X,'-')
70 format(11X,'-',5X,' LARGEST EIGENVALUE : ','(',F6.3,',',F6.3,')',8X,'-')
75 format(' ')
80 format(' KINETIC ENERGY : ',F7.2,' eV')
85 format(' LARGEST MODULUS OF EIGENVALUE : ',F6.3)
90 format(' LABEL OF LARGEST EIGENVALUE : ',I5)
95 format(' LARGEST EIGENVALUE : (',F6.3,',',F6.3,')')
100 format(5X,F9.5,2X,F9.5,2X,F9.5)
105 format(7X,'EIGENVALUES :',3X,'MODULUS :')
110 format(2X,'-------------------------------')
!==============================================================================!
end subroutine eig_mat_ar
!==============================================================================!

View File

@ -0,0 +1,103 @@
C
C=======================================================================
C
SUBROUTINE EIGDIF_AR
C
C This subroutine computes some of the eigenvalues of the
C multiple scattering matrix using Arnoldi iteration as
C implemented in ARPACK.
C
C Last modified : 21 June 2023
C
C INCLUDE 'spec.inc'
USE DIM_MOD
USE CONVTYP_MOD
USE COOR_MOD, NTCLU => NATCLU, NTP => NATYP
USE DEBWAL_MOD
USE EIGEN_MOD, NE => NE_EIG, E0 => E0_EIG, EFIN => EFIN_EIG
USE OUTFILES_MOD
USE OUTUNITS_MOD
USE RESEAU_MOD
USE TESTS_MOD
USE TRANS_MOD
USE VALIN_MOD, E1 => E0, PHLUM => PHILUM
C
COMPLEX IC,ONEC
COMPLEX TLT(0:NT_M,4,NATM,NE_M)
C
C
DATA CONV /0.512314/
C
IC=(0.,1.)
ONEC=(1.,0.)
C
OPEN(UNIT=IUO2, FILE=OUTFILE2, STATUS='UNKNOWN')
C
C Loop over the energies
C
DO JE=1,NE
IF(NE.GT.1) THEN
ECIN=E0+FLOAT(JE-1)*(EFIN-E0)/FLOAT(NE-1)
ELSEIF(NE.EQ.1) THEN
ECIN=E0
ENDIF
CALL LPM(ECIN,XLPM,*6)
XLPM1=XLPM/A
IF(IPRINT.GT.0) WRITE(IUO1,56) A,XLPM1
IF(ITL.EQ.0) THEN
VK(JE)=SQRT(ECIN+VINT)*CONV*A*ONEC
VK2(JE)=CABS(VK(JE)*VK(JE))
ENDIF
GAMMA=1./(2.*XLPM1)
IF(IPOTC.EQ.0) THEN
VK(JE)=VK(JE)+IC*GAMMA
ENDIF
IF(I_MFP.EQ.0) THEN
VK(JE)=CMPLX(REAL(VK(JE)))
VK2(JE)=CABS(VK(JE)*VK(JE))
ENDIF
IF(I_VIB.EQ.1) THEN
IF(IDCM.GE.1) WRITE(IUO1,22)
DO JAT=1,N_PROT
IF(IDCM.EQ.0) THEN
XK2UJ2=VK2(JE)*UJ2(JAT)
ELSE
XK2UJ2=VK2(JE)*UJ_SQ(JAT)
WRITE(IUO1,23) JAT,UJ_SQ(JAT)*A*A
ENDIF
CALL DWSPH(JAT,JE,XK2UJ2,TLT,I_VIB)
DO LAT=0,LMAX(JAT,JE)
TL(LAT,1,JAT,JE)=TLT(LAT,1,JAT,JE)
ENDDO
ENDDO
ENDIF
C
C Eigenvalue calculation
C
ckmd IF(I_PWM.EQ.0) THEN
ckmd CALL EIG_MAT_MS(JE,ECIN)
ckmd ELSE
ckmd CALL SPEC_RAD_POWER(JE,ECIN)
ckmd ENDIF
C
call eig_mat_ar(je, ecin)
C
C
C End of the loop on the energy
C
ENDDO
GOTO 7
C
6 WRITE(IUO1,55)
C
22 FORMAT(16X,'INTERNAL CALCULATION OF MEAN SQUARE DISPLACEMENTS',/,
&25X,' BY DEBYE UNCORRELATED MODEL:',/)
23 FORMAT(21X,'ATOM TYPE ',I5,' MSD = ',F8.6,' ANG**2')
55 FORMAT(///,12X,' <<<<<<<<<< THIS VALUE OF ILPM IS NOT',
&'AVAILABLE >>>>>>>>>>')
56 FORMAT(4X,'LATTICE PARAMETER A = ',F6.3,' ANGSTROEMS',4X,
*'MEAN FREE PATH = ',F6.3,' * A',//)
C
7 RETURN
C
END

View File

@ -0,0 +1,22 @@
SUBROUTINE RUN(NATP_M_, NATCLU_M_, NAT_EQ_M_, N_CL_L_M_,
& NE_M_, NL_M_, LI_M_, NEMET_M_, NO_ST_M_, NDIF_M_, NSO_M_,
& NTEMP_M_, NODES_EX_M_, NSPIN_M_, NTH_M_, NPH_M_, NDIM_M_,
& N_TILT_M_, N_ORD_M_, NPATH_M_, NGR_M_)
USE DIM_MOD
IMPLICIT INTEGER (A-Z)
CF2PY INTEGER, INTENT(IN,COPY) :: NATP_M_, NATCLU_M_, NAT_EQ_M_, N_CL_L_M_
CF2PY INTEGER, INTENT(IN,COPY) :: NE_M_, NL_M_, LI_M_, NEMET_M_, NO_ST_M_, NDIF_M_, NSO_M_
CF2PY INTEGER, INTENT(IN,COPY) :: NTEMP_M_, NODES_EX_M_, NSPIN_M_, NTH_M_, NPH_M_, NDIM_M_
CF2PY INTEGER, INTENT(IN,COPY) :: N_TILT_M_, N_ORD_M_, NPATH_M_, NGR_M_
CALL ALLOCATION(NATP_M_, NATCLU_M_, NAT_EQ_M_, N_CL_L_M_,
& NE_M_, NL_M_, LI_M_, NEMET_M_, NO_ST_M_, NDIF_M_, NSO_M_,
& NTEMP_M_, NODES_EX_M_, NSPIN_M_, NTH_M_, NPH_M_, NDIM_M_,
& N_TILT_M_, N_ORD_M_, NPATH_M_, NGR_M_)
CALL DO_MAIN()
CALL CLOSE_ALL_FILES()
END SUBROUTINE

View File

@ -178,6 +178,10 @@ CKMD WRITE(IUO1,*) ' '
CKMD WRITE(IUO1,*) ' ---> WORK(1),INFO =',WORK(1),INFO
CKMD WRITE(IUO1,*) ' '
CKMD ENDIF
C
CKMD Save eigenvalues to unformatted stream file eigenvalues.dat
C
call save_eigenvalues(w, jlin, e_kin)
C
N_EIG=0
C

View File

@ -0,0 +1,37 @@
c
c=======================================================================
c
subroutine save_eigenvalues (evalues, n, ke)
c
implicit none
c
integer, intent(in) :: n
real, intent(in) :: ke
complex*16, intent(in) :: evalues(n)
c
c Local variables
c
integer :: io
logical :: exists
c
c
inquire(file='eigenvalues.dat', exist=exists)
c
if (exists) then
open(newunit=io, file='eigenvalues.dat', status='old',
+ form='unformatted', access='stream', action='write',
+ position='append')
else
open(newunit=io, file='eigenvalues.dat', status='new',
+ form='unformatted', access='stream', action='write')
end if
c
write(io) ke, n, evalues(1:n)
c
close(io)
c
return
end subroutine save_eigenvalues
c
c=======================================================================
c

View File

@ -0,0 +1,14 @@
memalloc_src := memalloc/dim_mod.f memalloc/modules.f memalloc/allocation.f
cluster_gen_src := $(wildcard cluster_gen/*.f)
common_sub_src := $(wildcard common_sub/*.f)
renormalization_src := $(wildcard renormalization/*.f)
#eig_common_src := $(wildcard eig/common/*.f)
eig_common_src := $(filter-out eig/common/lapack_eig.f, $(wildcard eig/common/*.f))
eig_ar_src := $(wildcard eig/ar/*.f)
eig_ar_src_f90 := $(wildcard eig/ar/*.f90)
SRCS = $(memalloc_src) $(cluster_gen_src) $(common_sub_src) $(renormalization_src) $(eig_common_src) $(eig_ar_src_f90) $(eig_ar_src)
MAIN_F = eig/ar/main.f
SO = _eig_ar.so
include ../../../options.mk

View File

@ -2,7 +2,8 @@ memalloc_src := memalloc/dim_mod.f memalloc/modules.f memalloc/all
cluster_gen_src := $(wildcard cluster_gen/*.f)
common_sub_src := $(wildcard common_sub/*.f)
renormalization_src := $(wildcard renormalization/*.f)
eig_common_src := $(wildcard eig/common/*.f)
#eig_common_src := $(wildcard eig/common/*.f)
eig_common_src := $(filter-out eig/common/lapack_eig.f, $(wildcard eig/common/*.f))
eig_mi_src := $(wildcard eig/mi/*.f)
SRCS = $(memalloc_src) $(cluster_gen_src) $(common_sub_src) $(renormalization_src) $(eig_common_src) $(eig_mi_src)

View File

@ -25,6 +25,9 @@
USE OUTUNITS_MOD
USE PARCAL_MOD
USE PARCAL_A_MOD
USE CORREXP_MOD
USE GAUNT_C_MOD
USE Q_ARRAY_MOD
USE RELADS_MOD
USE RELAX_MOD
USE RESEAU_MOD
@ -136,6 +139,7 @@
CALL ALLOC_OUTUNITS()
CALL ALLOC_PARCAL()
CALL ALLOC_PARCAL_A()
CALL ALLOC_Q_ARRAY()
CALL ALLOC_RELADS()
CALL ALLOC_RELAX()
CALL ALLOC_RENORM()
@ -173,6 +177,7 @@
CALL ALLOC_C_G()
CALL ALLOC_C_G_A()
CALL ALLOC_C_G_M()
CALL ALLOC_CORREXP()
CALL ALLOC_DEXPFAC2()
CALL ALLOC_DFACTSQ()
CALL ALLOC_EIGEN()
@ -186,6 +191,7 @@
CALL ALLOC_SPECTRUM()
CALL ALLOC_DIRECT()
CALL ALLOC_DIRECT_A()
CALL ALLOC_GAUNT_C()
CALL ALLOC_PATH()
CALL ALLOC_ROT()
CALL ALLOC_ROT_CUB()

View File

@ -34,6 +34,7 @@ C ===============================================================
INTEGER NCG_M
INTEGER N_BESS, N_GAUNT
INTEGER NLTWO
INTEGER NLMM
C ===============================================================
CONTAINS
SUBROUTINE INIT_DIM()
@ -60,9 +61,10 @@ C ===============================================================
C N_BESS=100*NL_M
C N_GAUNT=5*NL_M
N_BESS=200*NL_M
N_BESS=300*NL_M
N_GAUNT=10*NL_M
NLTWO=2*NL_M
NLMM=LINMAX*NGR_M
END SUBROUTINE INIT_DIM
END MODULE DIM_MOD

View File

@ -192,6 +192,20 @@ C=======================================================================
END SUBROUTINE ALLOC_COOR
END MODULE COOR_MOD
C=======================================================================
MODULE CORREXP_MOD
IMPLICIT NONE
COMPLEX*16, ALLOCATABLE, DIMENSION(:,:) :: A
CONTAINS
SUBROUTINE ALLOC_CORREXP()
USE DIM_MOD
IF (ALLOCATED(A)) THEN
DEALLOCATE(A)
ENDIF
ALLOCATE(A(NLMM,NLMM))
END SUBROUTINE ALLOC_CORREXP
END MODULE CORREXP_MOD
C=======================================================================
MODULE DEBWAL_MOD
IMPLICIT NONE
@ -417,6 +431,20 @@ C=======================================================================
END SUBROUTINE ALLOC_PARCAL_A
END MODULE PARCAL_A_MOD
C=======================================================================
MODULE Q_ARRAY_MOD
IMPLICIT NONE
REAL, ALLOCATABLE, DIMENSION(:) :: Q
CONTAINS
SUBROUTINE ALLOC_Q_ARRAY()
USE DIM_MOD
IF (ALLOCATED(Q)) THEN
DEALLOCATE(Q)
ENDIF
ALLOCATE(Q(NGR_M))
END SUBROUTINE ALLOC_Q_ARRAY
END MODULE Q_ARRAY_MOD
C=======================================================================
MODULE RELADS_MOD
IMPLICIT NONE
@ -778,6 +806,20 @@ C=======================================================================
END SUBROUTINE ALLOC_DEXPFAC
END MODULE DEXPFAC_MOD
C=======================================================================
MODULE GAUNT_C_MOD
IMPLICIT NONE
REAL*8, ALLOCATABLE, DIMENSION(:,:,:) :: GNT
CONTAINS
SUBROUTINE ALLOC_GAUNT_C()
USE DIM_MOD
IF (ALLOCATED(GNT)) THEN
DEALLOCATE(GNT)
ENDIF
ALLOCATE(GNT(0:N_GAUNT,LINMAX,LINMAX))
END SUBROUTINE ALLOC_GAUNT_C
END MODULE GAUNT_C_MOD
C=======================================================================
MODULE LOGAMAD_MOD
IMPLICIT NONE

View File

@ -0,0 +1,11 @@
memalloc_src := memalloc/dim_mod.f memalloc/modules.f memalloc/allocation.f
cluster_gen_src := $(wildcard cluster_gen/*.f)
common_sub_src := $(wildcard common_sub/*.f)
renormalization_src := $(wildcard renormalization/*.f)
phd_ce_noso_nosp_nosym_src := $(filter-out phd_ce_noso_nosp_nosym/lapack_axb.f, $(wildcard phd_ce_noso_nosp_nosym/*.f))
SRCS = $(memalloc_src) $(cluster_gen_src) $(common_sub_src) $(renormalization_src) $(phd_ce_noso_nosp_nosym_src)
MAIN_F = phd_ce_noso_nosp_nosym/main.f
SO = _phd_ce_noso_nosp_nosym.so
include ../../../options.mk

View File

@ -0,0 +1,41 @@
C
C======================================================================
C
SUBROUTINE CMNGR(NAT,NGR,CMN)
C
C input : NAT,NGR
C output : CMN
C
C This subroutine calculate C(NAT-N,M-N) where,
C 1<=M<=NGR<=NAT,1<=N<=M
C C(NAT-N,M-N) is stored as CMN(N,M)
C
C H.-F. Zhao 2007
C
USE DIM_MOD
C
INTEGER NAT,NGR
C
REAL CMN(NGR_M,NGR_M)
C
IF(NGR.GT.NAT) THEN
WRITE(6,*) 'NGR is larger than NAT, which is wrong'
STOP
ENDIF
C
DO M=1,NGR
DO N=1,NGR
CMN(N,M)=0.
ENDDO
CMN(M,M)=1.
ENDDO
C
DO M=1,NGR
DO N=M-1,1,-1
CMN(N,M)=CMN(N+1,M)*FLOAT(NAT-N)/FLOAT(M-N)
ENDDO
ENDDO
C
RETURN
C
END

View File

@ -0,0 +1,46 @@
C
C======================================================================
C
SUBROUTINE COEFPQ(NAT,NGR)
C
C This subroutine computes the P(n,m) and Q(n) coefficients
C involved in the correlation expansion formulation
C
C Reference : equations (2.15) and (2.16) of
C H. Zhao, D. Sebilleau and Z. Wu,
C J. Phys.: Condens. Matter 20, 275241 (2008)
C
C H.-F. Zhao 2007
C
USE DIM_MOD
USE Q_ARRAY_MOD
C
INTEGER NAT,NGR
C
REAL CMN(NGR_M,NGR_M),P(NGR_M,NGR_M)
C
C
IF(NGR.GT.NAT) THEN
WRITE(6,*) 'NGR is larger than NAT, which is wrong'
STOP
ENDIF
C
CALL CMNGR(NAT,NGR,CMN)
C
DO N=1,NGR
P(N,N)=1.
Q(N)=P(N,N)
DO M=N+1,NGR
P(N,M)=0.
DO I=N,M-1
P(N,M)=P(N,M)-P(N,I)*CMN(I,M)
ENDDO
Q(N)=Q(N)+P(N,M)
C
ENDDO
C
ENDDO
C
RETURN
C
END

View File

@ -0,0 +1,47 @@
C
C======================================================================
C
SUBROUTINE COREXP_SAVM(JE,IGR,NGR,NLM,ITYPE,IGS,TAU)
C
C This subroutine call the correlation matrices calculations
C for a given order IGR
C
C H.-F. Zhao : 2007
C
USE DIM_MOD
USE COOR_MOD
USE Q_ARRAY_MOD
USE TRANS_MOD
C
INTEGER NLM(NGR_M),ITYPE(NGR_M),IGS(NGR_M)
C
REAL QI
C
COMPLEX*16 TAU(LINMAX,LINFMAX,NATCLU_M)
C
C
DO ITYP=1,N_PROT
NBTYP=NATYP(ITYP)
NLM(IGR)=LMAX(ITYP,JE)
ITYPE(IGR)=ITYP
DO NUM=1,NBTYP
IGS(IGR)=NCORR(NUM,ITYP)
C
IF(IGS(IGR).GT.IGS(IGR-1)) THEN
QI=Q(IGR)
CALL MPIS(IGR,NLM,ITYPE,IGS,JE,QI,TAU)
C
IGR=IGR+1
IF(IGR.LE.NGR) THEN
CALL COREXP_SAVM1(JE,IGR,NGR,NLM,ITYPE,IGS,TAU)
ENDIF
IGR=IGR-1
C
ENDIF
C
ENDDO
ENDDO
C
RETURN
C
END

View File

@ -0,0 +1,19 @@
C
C======================================================================
C
SUBROUTINE COREXP_SAVM1(JE,IGR,NGR,NLM,ITYPE,IGS,TAU)
C
C This subroutine allows a recursive use of COREXP_SAVM
C
C H.-F. Zhao : 2007
C
USE DIM_MOD
C
INTEGER NLM(NGR_M),ITYPE(NGR_M),IGS(NGR_M)
COMPLEX*16 TAU(LINMAX,LINFMAX,NATCLU_M)
C
CALL COREXP_SAVM(JE,IGR,NGR,NLM,ITYPE,IGS,TAU)
C
RETURN
C
END

View File

@ -0,0 +1,121 @@
C
C=======================================================================
C
SUBROUTINE COUMAT(ITL,MI,LF,MF,DELTA,RADIAL,MATRIX)
C
C This routine calculates the spin-independent PhD optical matrix
C elements for dipolar excitations. It is stored in
C MATRIX(JDIR,JPOL)
C
C Here, the conventions are :
C
C IPOL=1 : linearly polarized light
C IPOL=2 : circularly polarized light
C
C JPOL=1 : +/x polarization for circular/linear light
C JPOL=2 : -/y polarization for circular/linear light
C
C When IDICHR=0, JDIR = 1,2 and 3 correspond respectively to the x,y
C and z directions for the linear polarization. But for IDICHR=1,
C these basis directions are those of the position of the light.
C
C Last modified : 8 Dec 2008
C
USE DIM_MOD
C
USE INIT_L_MOD , L2 => NNL, L3 => LF1, L4 => LF2, L5 => ISTEP_LF
USE SPIN_MOD , I1 => ISPIN, N1 => NSPIN, N2 => NSPIN2, I2 => ISFLI
&P, I8 => IR_DIA, N3 => NSTEP
USE TYPCAL_MOD , I3 => IPHI, I4 => IE, I5 => ITHETA, I6 => IFTHET,
& I7 => IMOD, I9 => I_CP, I10 => I_EXT
C
COMPLEX MATRIX(3,2),SUM_1,SUM_2,DELTA,YLM(3,-1:1),RADIAL
COMPLEX ONEC,IC,IL,COEF,PROD
C
REAL RLM(1-NL_M:NL_M-1,1-NL_M:NL_M-1,0:NL_M-1),GNT(0:N_GAUNT)
REAL THETA(3),PHI(3)
C
DATA PI4S3,C_LIN,SQR2 /4.188790,1.447202,1.414214/
DATA PIS2 /1.570796/
C
ONEC=(1.,0.)
IC=(0.,1.)
C
IF(INITL.EQ.0) GOTO 2
C
M=MF-MI
C
IF(MOD(LF,4).EQ.0) THEN
IL=ONEC
ELSEIF(MOD(LF,4).EQ.1) THEN
IL=IC
ELSEIF(MOD(LF,4).EQ.2) THEN
IL=-ONEC
ELSEIF(MOD(LF,4).EQ.3) THEN
IL=-IC
ENDIF
C
CALL GAUNT(LI,MI,LF,MF,GNT)
C
IF(ITL.EQ.0) THEN
c COEF=CEXP(IC*DELTA)*CONJG(IL)
COEF=CEXP(IC*DELTA)*IL
ELSE
IF(IDICHR.EQ.0) THEN
c COEF=PI4S3*CONJG(IL)
COEF=PI4S3*IL
ELSE
c COEF=C_LIN*CONJG(IL)
COEF=C_LIN*IL
ENDIF
ENDIF
C
PROD=COEF*RADIAL*GNT(1)
C
IF(IDICHR.EQ.0) THEN
YLM(1,-1)=(0.345494,0.)
YLM(1,0)=(0.,0.)
YLM(1,1)=(-0.345494,0.)
YLM(2,-1)=(0.,-0.345494)
YLM(2,0)=(0.,0.)
YLM(2,1)=(0.,-0.345494)
YLM(3,-1)=(0.,0.)
YLM(3,0)=(0.488602,0.)
YLM(3,1)=(0.,0.)
C
DO JDIR=1,3
MATRIX(JDIR,1)=PROD*CONJG(YLM(JDIR,M))
ENDDO
C
ELSEIF(IDICHR.GE.1) THEN
C
THETA(1)=PIS2
PHI(1)=0.
THETA(2)=PIS2
PHI(2)=PIS2
THETA(3)=0.
PHI(3)=0.
C
DO JDIR=1,3
CALL DJMN(THETA(JDIR),RLM,1)
SUM_1=RLM(-1,M,1)*PROD*CEXP((0.,-1.)*M*PHI(JDIR))
SUM_2=RLM(1,M,1)*PROD*CEXP((0.,-1.)*M*PHI(JDIR))
IF(IPOL.EQ.2) THEN
MATRIX(JDIR,1)=SQR2*SUM_1
MATRIX(JDIR,2)=SQR2*SUM_2
ELSEIF(ABS(IPOL).EQ.1) THEN
MATRIX(JDIR,1)=(SUM_2-SUM_1)
MATRIX(JDIR,2)=(SUM_2+SUM_1)*IC
ENDIF
ENDDO
ENDIF
GOTO 1
C
2 DO JDIR=1,3
MATRIX(JDIR,1)=ONEC
MATRIX(JDIR,2)=ONEC
ENDDO
C
1 RETURN
C
END

View File

@ -0,0 +1,85 @@
C
C=======================================================================
C
SUBROUTINE DWSPH(JTYP,JE,X,TLT,ISPEED)
C
C This routine recomputes the T-matrix elements taking into account the
C mean square displacements.
C
C When the argument X is tiny, no vibrations are taken into account
C
C Last modified : 25 Apr 2013
C
USE DIM_MOD
C
USE TRANS_MOD
C
DIMENSION GNT(0:N_GAUNT)
C
COMPLEX TLT(0:NT_M,4,NATM,NE_M),SL1,ZEROC
C
COMPLEX*16 FFL(0:2*NL_M)
C
DATA PI4,EPS /12.566371,1.0E-10/
C
ZEROC=(0.,0.)
C
IF(X.GT.EPS) THEN
C
C Standard case: vibrations
C
IF(ISPEED.LT.0) THEN
NSUM_LB=ABS(ISPEED)
ENDIF
C
COEF=PI4*EXP(-X)
NL2=2*LMAX(JTYP,JE)+2
IBESP=5
MG1=0
MG2=0
C
CALL BESPHE(NL2,IBESP,X,FFL)
C
DO L=0,LMAX(JTYP,JE)
XL=FLOAT(L+L+1)
SL1=ZEROC
C
DO L1=0,LMAX(JTYP,JE)
XL1=FLOAT(L1+L1+1)
CALL GAUNT(L,MG1,L1,MG2,GNT)
L2MIN=ABS(L1-L)
IF(ISPEED.GE.0) THEN
L2MAX=L1+L
ELSEIF(ISPEED.LT.0) THEN
L2MAX=L2MIN+2*(NSUM_LB-1)
ENDIF
SL2=0.
C
DO L2=L2MIN,L2MAX,2
XL2=FLOAT(L2+L2+1)
C=SQRT(XL1*XL2/(PI4*XL))
SL2=SL2+C*GNT(L2)*REAL(DREAL(FFL(L2)))
ENDDO
C
SL1=SL1+SL2*TL(L1,1,JTYP,JE)
ENDDO
C
TLT(L,1,JTYP,JE)=COEF*SL1
C
ENDDO
C
ELSE
C
C Argument X tiny: no vibrations
C
DO L=0,LMAX(JTYP,JE)
C
TLT(L,1,JTYP,JE)=TL(L,1,JTYP,JE)
C
ENDDO
C
ENDIF
C
RETURN
C
END

View File

@ -0,0 +1,26 @@
C
C=======================================================================
C
SUBROUTINE FACDIF(COSTH,JAT,JE,FTHETA)
C
C This routine computes the plane wave scattering factor
C
USE DIM_MOD
C
USE TRANS_MOD
C
DIMENSION PL(0:100)
C
COMPLEX FTHETA
C
FTHETA=(0.,0.)
NL=LMAX(JAT,JE)+1
CALL POLLEG(NL,COSTH,PL)
DO 20 L=0,NL-1
FTHETA=FTHETA+(2*L+1)*TL(L,1,JAT,JE)*PL(L)
20 CONTINUE
FTHETA=FTHETA/VK(JE)
C
RETURN
C
END

View File

@ -0,0 +1,113 @@
C
C=======================================================================
C
SUBROUTINE FACDIF1(VKE,RJ,RJK,THRJ,PHIRJ,BETA,GAMMA,L,M,FSPH,JAT,J
&E,*)
C
C This routine computes a spherical wave scattering factor
C
C Last modified : 03/04/2006
C
USE DIM_MOD
USE APPROX_MOD
USE EXPFAC_MOD
USE TRANS_MOD
USE TYPCAL_MOD , I2 => IPHI, I3 => IE, I4 => ITHETA, I5 => IMOD, I
&6 => IPOL, I7 => I_CP, I8 => I_EXT, I9 => I_TEST
C
DIMENSION PLMM(0:100,0:100)
DIMENSION D(1-NL_M:NL_M-1,1-NL_M:NL_M-1,0:NL_M-1)
C
COMPLEX HLM(0:NO_ST_M,0:NL_M-1),HLN(0:NO_ST_M,0:NL_M-1),FSPH,RHOJ
COMPLEX HLM1,HLM2,HLM3,HLM4,ALMU,BLMU,SLP,SNU,SMU,VKE
COMPLEX RHOJK
C
C
DATA PI/3.141593/
C
A=1.
INTER=0
IF(ITL.EQ.1) VKE=VK(JE)
RHOJ=VKE*RJ
RHOJK=VKE*RJK
HLM1=(1.,0.)
HLM2=(1.,0.)
HLM3=(1.,0.)
HLM4=(1.,0.)
IEM=1
CSTH=COS(BETA)
IF((IFTHET.EQ.0).OR.(THRJ.LT.0.0001)) THEN
INTER=1
BLMU=SQRT(4.*PI/FLOAT(2*L+1))*CEXP((0.,-1.)*M*(PHIRJ-PI))
ENDIF
CALL PLM(CSTH,PLMM,LMAX(JAT,JE))
IF(ISPHER.EQ.0) NO1=0
IF(ISPHER.EQ.1) THEN
IF(NO.EQ.8) THEN
NO1=LMAX(JAT,JE)+1
ELSE
NO1=NO
ENDIF
CALL POLHAN(ISPHER,NO1,LMAX(JAT,JE),RHOJ,HLM)
IF(IEM.EQ.0) THEN
HLM4=HLM(0,L)
ENDIF
IF(RJK.GT.0.0001) THEN
NDUM=0
CALL POLHAN(ISPHER,NDUM,LMAX(JAT,JE),RHOJK,HLN)
ENDIF
CALL DJMN(THRJ,D,L)
A1=ABS(D(0,M,L))
IF(((A1.LT.0.0001).AND.(IFTHET.EQ.1)).AND.(INTER.EQ.0)) RETURN 1
&
ENDIF
MUMAX=MIN0(L,NO1)
SMU=(0.,0.)
DO 10 MU=0,MUMAX
IF(MOD(MU,2).EQ.0) THEN
B=1.
ELSE
B=-1.
IF(SIN(BETA).LT.0.) THEN
A=-1.
ENDIF
ENDIF
IF(ISPHER.LE.1) THEN
ALMU=(1.,0.)
C=1.
ENDIF
IF(ISPHER.EQ.0) GOTO 40
IF(INTER.EQ.0) BLMU=CMPLX(D(M,0,L))
IF(MU.GT.0) THEN
C=B*FLOAT(L+L+1)/EXPF(MU,L)
ALMU=(D(M,MU,L)*CEXP((0.,-1.)*MU*GAMMA)+B*
* CEXP((0.,1.)*MU*GAMMA)*D(M,-MU,L))/BLMU
ELSE
C=1.
ALMU=CMPLX(D(M,0,L))/BLMU
ENDIF
40 SNU=(0.,0.)
NU1=INT(0.5*(NO1-MU)+0.0001)
NUMAX=MIN0(NU1,L-MU)
DO 20 NU=0,NUMAX
SLP=(0.,0.)
LPMIN=MAX0(MU,NU)
DO 30 LP=LPMIN,LMAX(JAT,JE)
IF(ISPHER.EQ.1) THEN
HLM1=HLM(NU,LP)
IF(RJK.GT.0.0001) HLM3=HLN(0,LP)
ENDIF
SLP=SLP+FLOAT(2*LP+1)*TL(LP,1,JAT,JE)*HLM1*PLMM(LP,MU)*HLM3
30 CONTINUE
IF(ISPHER.EQ.1) THEN
HLM2=HLM(MU+NU,L)
ENDIF
SNU=SNU+SLP*HLM2
20 CONTINUE
SMU=SMU+SNU*C*ALMU*A*B
10 CONTINUE
FSPH=SMU/(VKE*HLM4)
C
RETURN
C
END

View File

@ -0,0 +1,126 @@
C
C=======================================================================
C
SUBROUTINE GAUNT_ST(LMAX_T)
C
C This subroutine calculates the Gaunt coefficient G(L2,L3|L1)
C using a downward recursion scheme due to Schulten and Gordon
C for the Wigner's 3j symbols. The result is stored as GNT(L3),
C making use of the selection rule M3 = M1 - M2.
C
C Ref. : K. Schulten and R. G. Gordon, J. Math. Phys. 16, 1961 (1975)
C
C This is the double precision version where the values are stored
C
C Last modified : 14 May 2009
C
C
USE DIM_MOD
USE LOGAMAD_MOD
USE GAUNT_C_MOD
IMPLICIT DOUBLE PRECISION (A-H,O-Z)
C
INTEGER LMAX_T
C
REAL*8 F(0:N_GAUNT),G(0:N_GAUNT),A(0:N_GAUNT),A1(0:N_GAUNT)
REAL*8 B(0:N_GAUNT)
C
DATA PI4/12.566370614359D0/
C
DO L1=0,LMAX_T
IL1=L1*L1+L1+1
DO M1=-L1,L1
IND1=IL1+M1
LM1=L1+M1
KM1=L1-M1
DO L2=0,LMAX_T
IL2=L2*L2+L2+1
C
IF(MOD(M1,2).EQ.0) THEN
COEF=DSQRT(DFLOAT((L1+L1+1)*(L2+L2+1))/PI4)
ELSE
COEF=-DSQRT(DFLOAT((L1+L1+1)*(L2+L2+1))/PI4)
ENDIF
C
L12=L1+L2
K12=L1-L2
L12_1=L12+L12+1
L12_2=L12*L12
L12_21=L12*L12+L12+L12+1
K12_2=K12*K12
C
F(L12+1)=0.D0
G(L12+1)=0.D0
A(L12+1)=0.D0
A1(L12+1)=0.D0
A1(L12)=2.D0*DSQRT(DFLOAT(L1*L2*L12_1*L12_2))
D1=GLD(L2+L2+1,1)-GLD(L12_1+1,1)
D5=0.5D0*(GLD(L1+L1+1,1)+GLD(L2+L2+1,1)-GLD(L12_1+1,1))
D6=GLD(L12+1,1)-GLD(L1+1,1)-GLD(L2+1,1)
C
IF(MOD(K12,2).EQ.0) THEN
G(L12)=DEXP(D5+D6)
ELSE
G(L12)=-DEXP(D5+D6)
ENDIF
C
DO M2=-L2,L2
IND2=IL2+M2
C
M3=M1-M2
LM2=L2+M2
KM2=L2-M2
C
DO J=1,N_GAUNT
GNT(J,IND2,IND1)=0.D0
ENDDO
C
IF((ABS(M1).GT.L1).OR.(ABS(M2).GT.L2)) GOTO 10
C
D2=GLD(L1+L1+1,1)-GLD(LM2+1,1)
D3=GLD(L12+M3+1,1)-GLD(KM2+1,1)
D4=GLD(L12-M3+1,1)-GLD(LM1+1,1)-GLD(KM1+1,1)
C
IF(MOD(KM1-KM2,2).EQ.0) THEN
F(L12)=DSQRT(DEXP(D1+D2+D3+D4))
ELSE
F(L12)=-DSQRT(DEXP(D1+D2+D3+D4))
ENDIF
C
A(L12)=2.D0*DSQRT(DFLOAT(L1*L2*L12_1*(L12_2-M3*M3)))
B(L12)=-DFLOAT(L12_1*((L2*L2-L1*L1-K12)*M3+L12*(L12+1)
1 *(M2+M1)))
C
IF(ABS(M3).LE.L12) THEN
GNT(L12,IND2,IND1)=COEF*F(L12)*G(L12)*
1 DSQRT(DFLOAT(L12_1))
ENDIF
C
JMIN=MAX0(ABS(K12),ABS(M3))
C
DO J=L12-1,JMIN,-1
J1=J+1
J2=J+2
JJ=J*J
A1(J)=DSQRT(DFLOAT(JJ*(JJ-K12_2)*(L12_21-JJ)))
A(J)=DSQRT(DFLOAT((JJ-K12_2)*(L12_21-JJ)*(JJ-M3*M3)))
B(J)=-DFLOAT((J+J1)*(L2*(L2+1)*M3-L1*(L1+1)*M3+J*J1*
1 (M2+M1)))
F(J)=-(DFLOAT(J1)*A(J2)*F(J2)+B(J1)*F(J1))/(DFLOAT(J2)*
1 A(J1))
G(J)=-(DFLOAT(J1)*A1(J2)*G(J2))/(DFLOAT(J2)*A1(J1))
C
IF(ABS(M3).LE.J) THEN
GNT(J,IND2,IND1)=COEF*F(J)*G(J)*DSQRT(DFLOAT(J+J1))
ENDIF
ENDDO
C
ENDDO
ENDDO
ENDDO
ENDDO
C
10 RETURN
C
END

File diff suppressed because it is too large Load Diff

View File

@ -0,0 +1,21 @@
SUBROUTINE RUN(NATP_M_, NATCLU_M_, NAT_EQ_M_, N_CL_L_M_,
& NE_M_, NL_M_, LI_M_, NEMET_M_, NO_ST_M_, NDIF_M_, NSO_M_,
& NTEMP_M_, NODES_EX_M_, NSPIN_M_, NTH_M_, NPH_M_, NDIM_M_,
& N_TILT_M_, N_ORD_M_, NPATH_M_, NGR_M_)
USE DIM_MOD
IMPLICIT INTEGER (A-Z)
CF2PY INTEGER, INTENT(IN,COPY) :: NATP_M_, NATCLU_M_, NAT_EQ_M_, N_CL_L_M_
CF2PY INTEGER, INTENT(IN,COPY) :: NE_M_, NL_M_, LI_M_, NEMET_M_, NO_ST_M_, NDIF_M_, NSO_M_
CF2PY INTEGER, INTENT(IN,COPY) :: NTEMP_M_, NODES_EX_M_, NSPIN_M_, NTH_M_, NPH_M_, NDIM_M_
CF2PY INTEGER, INTENT(IN,COPY) :: N_TILT_M_, N_ORD_M_, NPATH_M_, NGR_M_
CALL ALLOCATION(NATP_M_, NATCLU_M_, NAT_EQ_M_, N_CL_L_M_,
& NE_M_, NL_M_, LI_M_, NEMET_M_, NO_ST_M_, NDIF_M_, NSO_M_,
& NTEMP_M_, NODES_EX_M_, NSPIN_M_, NTH_M_, NPH_M_, NDIM_M_,
& N_TILT_M_, N_ORD_M_, NPATH_M_, NGR_M_)
CALL MAIN_PHD_NS_CE()
CALL CLOSE_ALL_FILES()
END SUBROUTINE RUN

File diff suppressed because it is too large Load Diff

View File

@ -0,0 +1,280 @@
C
C
C======================================================================
C
SUBROUTINE MPIS(N,NLM,ITYP,IGS,JE,QI,TAU)
C
C
C This subroutine construct the correlation matrices and uses
C LU decomposition method to do the matrix inversion.
C The inverse matrix which is the contribution of a small atom group
C is kept for further use.
C
C H. -F. Zhao : 2007
C
C Last modified (DS) : 13 May 2009
C
USE DIM_MOD
USE COOR_MOD
USE INIT_L_MOD
USE GAUNT_C_MOD
USE TRANS_MOD
USE CORREXP_MOD
C
INTEGER NLM(NGR_M),ITYP(NGR_M),IGS(NGR_M)
COMPLEX*16 TAU(LINMAX,LINFMAX,NATCLU_M)
C
REAL QI
C
COMPLEX*16 ZEROC,ONEC,IC
C
COMPLEX*16 ATTL(0:NT_M,NATM)
COMPLEX*16 EXPJN,ATTJN
COMPLEX*16 YLM(0:NLTWO,-NLTWO:NLTWO)
COMPLEX*16 HL1(0:NLTWO)
COMPLEX*16 SUM_L,SUM_L2
COMPLEX*16 SUM_L_A,SUM_L2_A,SUM_L_B,SUM_L2_B
C
REAL*8 FOURPI
REAL*8 XJN,YJN,ZJN,RJN,KRJN,ZDJN
REAL*8 IM_VK,RE_VK
C
INTEGER IPIV(NLMM),ONE_L,IN1
C
COMPLEX*16 FOURPI_IC,IC_L,IC_REF,TEMP,TEMP1,TEMP2,CN1
COMPLEX*16 AINV(NLMM,NLMM),IN(NLMM,LINFMAX)
C
DATA FOURPI /12.566370614359D0/
C
ZEROC=(0.D0,0.D0)
ONEC=(1.D0,0.D0)
IC=(0.D0,1.D0)
IBESS=3
FOURPI_IC=-IC*FOURPI
C
LM0=LMAX(1,JE)
LM0=MIN(LM0,LF2)
NRHS=(LM0+1)*(LM0+1)
INDJ=0
C
NM=0
DO I=1,N-1
J=NLM(I)+1
NM=NM+J*J
ENDDO
L=NLM(N)
LNMAX=L
L=(L+1)*(L+1)
NM1=NM+1
NML=NM+L
NTYP=ITYP(N)
C
DO L=0,LNMAX
ATTL(L,N)=DCMPLX(TL(L,1,NTYP,JE))
ENDDO
IM_VK=-DIMAG(DCMPLX(VK(JE)))
RE_VK=DBLE(VK(JE))
C
C set up matrix blocks C((N-1)*1) and D(1*(N-1))
C
I=IGS(N)
XN=SYM_AT(1,I)
YN=SYM_AT(2,I)
ZN=SYM_AT(3,I)
C
DO J=1,N-1
JATL=IGS(J)
LJMAX=NLM(J)
JTYP=ITYP(J)
J1=J-1
C
XJN=DBLE(SYM_AT(1,JATL)-XN)
YJN=DBLE(SYM_AT(2,JATL)-YN)
ZJN=DBLE(SYM_AT(3,JATL)-ZN)
RJN=DSQRT(XJN*XJN+YJN*YJN+ZJN*ZJN)
KRJN=RE_VK*RJN
ATTJN=FOURPI_IC*DEXP(IM_VK*RJN)
EXPJN=(XJN+IC*YJN)/RJN
ZDJN=ZJN/RJN
CALL SPH_HAR2(2*NL_M,ZDJN,EXPJN,YLM,LNMAX+LJMAX)
CALL BESPHE2(LNMAX+LJMAX+1,IBESS,KRJN,HL1)
DO L=0,LJMAX
ATTL(L,J)=ATTJN*DCMPLX(TL(L,1,JTYP,JE))
ENDDO
C
II=NM
IN1=-1
CN1=IC
JJ=0
C
DO LN=0,LNMAX
ILN=LN*LN+LN+1
IN1=-IN1
CN1=-CN1*IC
C
DO MLN=-LN,LN
INDN=ILN+MLN
II=II+1
JJ0=J1*INDJ
ONE_L=-IN1
IC_REF=-CN1*IC
C
DO LJ=0,LJMAX
ILJ=LJ*LJ+LJ+1
L_MIN=ABS(LJ-LN)
L_MAX=LJ+LN
ONE_L=-ONE_L
IC_REF=IC_REF*IC
C
C Case MLJ equal to zero
C
JJ1=JJ0+ILJ
IF(LJ.GE.LN) THEN
IC_L=-IC_REF
ELSE
IC_L=-ONEC/IC_REF
ENDIF
C
SUM_L=ZEROC
SUM_L2=ZEROC
C
DO L=L_MIN,L_MAX,2
IC_L=-IC_L
IF(ABS(MLN).LE.L) THEN
TEMP=IC_L*HL1(L)*GNT(L,ILJ,INDN)
SUM_L=SUM_L+YLM(L,MLN)*TEMP
SUM_L2=SUM_L2+DCONJG(YLM(L,MLN))*TEMP
ENDIF
ENDDO
C
IF(ONE_L.EQ.-1) SUM_L2=-SUM_L2
A(JJ1,II)=ATTL(LJ,J)*SUM_L
A(II,JJ1)=ATTJN*ATTL(LN,N)*SUM_L2
C
C
C Case MLJ not equal to zero
C
DO MLJ=1,LJ
INDJ=ILJ+MLJ
INDJN=ILJ-MLJ
JJ1=JJ0+INDJ
JJ1N=JJ0+INDJN
MA=MLN-MLJ
MB=MLN+MLJ
IF(LJ.GE.LN) THEN
IC_L=-IC_REF
ELSE
IC_L=-ONEC/IC_REF
ENDIF
C
SUM_L_A=ZEROC
SUM_L2_A=ZEROC
SUM_L_B=ZEROC
SUM_L2_B=ZEROC
C
DO L=L_MIN,L_MAX,2
IC_L=-IC_L
IF(ABS(MA).LE.L) THEN
TEMP1=IC_L*HL1(L)*GNT(L,INDJ,INDN)
SUM_L_A=SUM_L_A+YLM(L,MA)*TEMP1
SUM_L2_A=SUM_L2_A+DCONJG(YLM(L,MA))*TEMP1
ENDIF
IF(ABS(MB).LE.L) THEN
TEMP2=IC_L*HL1(L)*GNT(L,INDJN,INDN)
SUM_L_B=SUM_L_B+YLM(L,MB)*TEMP2
SUM_L2_B=SUM_L2_B+DCONJG(YLM(L,MB))*TEMP2
ENDIF
ENDDO
C
IF(ONE_L.EQ.-1) THEN
SUM_L2_A=-SUM_L2_A
SUM_L2_B=-SUM_L2_B
ENDIF
A(JJ1,II)=ATTL(LJ,J)*SUM_L_A
A(II,JJ1)=ATTJN*ATTL(LN,N)*SUM_L2_A
A(JJ1N,II)=ATTL(LJ,J)*SUM_L_B
A(II,JJ1N)=ATTJN*ATTL(LN,N)*SUM_L2_B
ENDDO
C
C
ENDDO
JJ=JJ0+INDJ
C
ENDDO
ENDDO
C
JJ=JJ-INDN
C
ENDDO
C
C add B to A
C
DO I=NM1,NML
DO J=NM1,NML
IF(J.EQ.I) THEN
A(J,I)=ONEC
ELSE
A(J,I)=ZEROC
ENDIF
ENDDO
ENDDO
C
C construct AINV
C
DO I=1,NML
DO J=1,NML
AINV(J,I)=A(J,I)
ENDDO
ENDDO
C
C
C matrix inversion(ax=b)
C
CALL ZGETRF(NML,NML,AINV,NLMM,IPIV,INFO1)
IF(INFO1.NE.0) THEN
WRITE(6,*) ' ---> INFO1 =',INFO1
ELSE
C
DO I=1,NRHS
DO J=1,NML
IF(J.EQ.I) THEN
IN(J,I)=(1.D0,0.D0)
ELSE
IN(J,I)=(0.D0,0.D0)
ENDIF
ENDDO
ENDDO
C
CALL ZGETRS('N',NML,NRHS,AINV,NLMM,IPIV,IN,NLMM,INFO)
IF(INFO.NE.0) THEN
WRITE(6,*) ' ---> INFO =',INFO
ENDIF
ENDIF
C
C sum of tau
C
KLIN=0
DO K=1,N
KATL=IGS(K)
LMK=NLM(K)
INDKM=(LMK+1)*(LMK+1)
C
DO INDJ=1,NRHS
C
DO INDK=1,INDKM
KLIN=KLIN+1
C
TAU(INDK,INDJ,KATL)=TAU(INDK,INDJ,KATL)
1 +DBLE(QI)*IN(KLIN,INDJ)
C
ENDDO
KLIN=KLIN-INDKM
C
ENDDO
KLIN=KLIN+INDKM
C
ENDDO
C
RETURN
C
END

View File

@ -0,0 +1,165 @@
C
C
C======================================================================
C
SUBROUTINE MS_COR(JE,TAU)
C
C
C This subroutine calculates the scattering path operator by
C the correlation expansion method.
C
C The scattering path operator matrix of each small atom group
C is obtained by using LU decomposition method.
C
C The running time of matrix inversion subroutine used in this program
C scales with N^3, the memory occupied scales with N^2. We advise user to
C use full MS method to get the scattering path operator, i.e. directly
C with matrix inversion method if NGR is larger than 3. If NGR is less
C than 4 (i.e <=3) this subroutine will gain time.
C
C This subroutine never gain memory comparing to the subrourine INV_MAT_MS
C as I use three large matrices stored in common, each matrix is larger or
C as large as the matrix used in INV_MAT_MS.
C
C As I don't find a good way to solve the group problem, where all the contribution
C of group IGR<=NGR are collected and each small contribution has to be stored
C for the further larger-atom-group contribution, it's better that users change the
C parameter NGR_M which is set in included file 'spec.inc' to be NGR or NGR+1
C where NGR is the cut-off.user insterested. this subrouitne works for NGR is less
C than 6(<=5), if users want to calculate larger NGR, they should modify the code here
C to make them workable, the code is marked by 'C' in each lines (about 300 lines
C below here), users just release them until to the desired cut-off, the maximum is
C 9, however, users can enlarge it if they want to. Warning ! NGR_M set in
C included file should be larger than NGR and the figure listed below, don't forget
C to compile the code after modification.
C
C Users can modify the code to make it less memory-occupied, however, no matter they
C do, the memories that used are more than full MS method used, so the only advantage
C that this code has is to gain time when NGR<=3, with command 'common' used here,
C the code will run faster.
C
C H.-F. Zhao : 2007
C
C (Photoelectron case)
C
C Last modified : 31 Jan 2008
C
C
C
USE DIM_MOD
USE COOR_MOD
USE INIT_L_MOD
USE TRANS_MOD
USE APPROX_MOD
USE CORREXP_MOD
USE Q_ARRAY_MOD
C
COMPLEX*16 TAU1(LINMAX,LINFMAX,NATCLU_M),ONEC,ZEROC
C
INTEGER NLM(NGR_M),ITYP(NGR_M),IGS(NGR_M)
C
COMPLEX TAU(LINMAX,LINFMAX,NATCLU_M),TLJ
C
C
ONEC=(1.D0,0.D0)
ZEROC=(0.D0,0.D0)
C
LM0=LMAX(1,JE)
LM0=MIN(LM0,LF2)
NRHS=(LM0+1)*(LM0+1)
C
NGR_MAX=NGR_M
NGR=NDIF
C
IF(NGR_M.GT.NATCLU) THEN
WRITE(6,*) ' ---> NGR_M should be smaller than NATCLU'
WRITE(6,*) ' ---> it is reduced to NATCLU=',NATCLU
NGR_MAX=NATCLU
ENDIF
C
IF(NGR.LT.1) THEN
WRITE(6,*) ' ---> NGR < 1, no expansion is done'
STOP
ELSE
IF(NGR.GT.NGR_MAX) THEN
WRITE(6,*) ' ---> NGR is too large, reduce to NGR_M=',
& NGR_MAX
NGR=NGR_MAX
ENDIF
ENDIF
C
C Case NGR = 1
C
IF(NGR.EQ.1) THEN
DO LJ=0,LM0
ILJ=LJ*LJ+LJ+1
TLJ=TL(LJ,1,1,JE)
DO MJ=-LJ,LJ
INDJ=ILJ+MJ
TAU(INDJ,INDJ,1)=TLJ
ENDDO
ENDDO
C
GOTO 100
ENDIF
C
C NGR >=2 case
C
C
DO INDJ=1,NRHS
TAU1(INDJ,INDJ,1)=DBLE(Q(1))*ONEC
ENDDO
C
C Constructs the group matrix and inverses it
C
IGR=1
LMJ=LMAX(1,JE)
NLM(IGR)=LMJ
INDJM=(LMJ+1)*(LMJ+1)
ITYP(IGR)=1
IGS(IGR)=1
C
DO I=1,INDJM
DO J=1,INDJM
IF (J.EQ.I) THEN
A(J,I)=ONEC
ELSE
A(J,I)=ZEROC
ENDIF
ENDDO
ENDDO
C
IGR=IGR+1
CALL COREXP_SAVM(JE,IGR,NGR,NLM,ITYP,IGS,TAU1)
IGR=IGR-1
C
C TAU=TAU*tj
C
DO KTYP=1,N_PROT
NBTYPK=NATYP(KTYP)
LMK=LMAX(KTYP,JE)
INDKM=(LMK+1)*(LMK+1)
DO KNUM=1,NBTYPK
KATL=NCORR(KNUM,KTYP)
C
DO LJ=0,LM0
ILJ=LJ*LJ+LJ+1
TLJ=TL(LJ,1,1,JE)
DO MJ=-LJ,LJ
INDJ=ILJ+MJ
C
DO INDK=1,INDKM
TAU(INDK,INDJ,KATL)=CMPLX(TAU1(INDK,INDJ,KATL))*TLJ
ENDDO
C
ENDDO
ENDDO
C
ENDDO
ENDDO
C
100 CONTINUE
C
RETURN
C
END

File diff suppressed because it is too large Load Diff

View File

@ -0,0 +1,106 @@
C
C=======================================================================
C
SUBROUTINE PLOTFD(A,LMX,ITL,NL,NAT,NE)
C
C This routine prepares the output for a plot of the scattering factor
C
USE DIM_MOD
C
USE APPROX_MOD
USE FDIF_MOD
USE INIT_L_MOD , L => LI, I2 => INITL, I3 => NNL, I4 => LF1, I5 =>
& LF2, I10 => ISTEP_LF
USE INIT_J_MOD
USE OUTFILES_MOD
USE OUTUNITS_MOD
USE PARCAL_MOD , N3 => NPHI, N4 => NE, N5 => NTHETA, N6 => NEPS
USE TYPCAL_MOD , I7 => IFTHET, I8 => IMOD, I9 => IPOL, I12 => I_CP
&, I13 => I_EXT, I14 => I_TEST
USE VALIN_MOD , U1 => THLUM, U2 => PHILUM, U3 => ELUM, N7 => NONVO
&L
USE VALFIN_MOD
C
C
C
DIMENSION LMX(NATM,NE_M)
C
COMPLEX FSPH,VKE
C
C
C
DATA PI,CONV/3.141593,0.512314/
C
OPEN(UNIT=IUO3, FILE=OUTFILE3, STATUS='UNKNOWN')
IF(ISPHER.EQ.0) THEN
L=0
LMAX=0
ELSE
LMAX=L
ENDIF
PHITOT=360.
THTOT=360.*ITHETA*(1-IPHI)+180.*ITHETA*IPHI
NPHI=(NFTHET+1)*IPHI+(1-IPHI)
NTHT=(NFTHET+1)*ITHETA*(1-IPHI)+(NFTHET/2+1)*ITHETA*IPHI+
* (1-ITHETA)
NE=NFTHET*IE + (1-IE)
WRITE(IUO3,1) ISPHER,NL,NAT,L,NTHT,NPHI,NE,E0,EFIN
DO 10 JT=1,NTHT
DTHETA=THETA1+FLOAT(JT-1)*THTOT/FLOAT(MAX0(NTHT-1,1))
RTHETA=DTHETA*PI/180.
TEST=SIN(RTHETA)
IF(TEST.GE.0.) THEN
POZ=PI
EPS=1.
ELSE
POZ=0.
EPS=-1.
ENDIF
BETA=RTHETA*EPS
IF(ABS(TEST).LT.0.0001) THEN
NPHIM=1
ELSE
NPHIM=NPHI
ENDIF
DO 20 JP=1,NPHIM
DPHI=PHI1+FLOAT(JP-1)*PHITOT/FLOAT(MAX0(NPHI-1,1))
RPHI=DPHI*PI/180.
GAMMA=POZ-RPHI
DO 30 JE=1,NE
IF(NE.EQ.1) THEN
ECIN=E0
ELSE
ECIN=E0+FLOAT(JE-1)*(EFIN-E0)/FLOAT(NE-1)
ENDIF
IF(ITL.EQ.0) VKE=SQRT(ECIN-ABS(VINT))*CONV*A*(1.,0.)
DO 40 JAT=1,NAT
IF(L.GT.LMX(JAT,JE)) GOTO 90
DO 50 M=-LMAX,LMAX
CALL FACDIF1(VKE,R1,R2,THETA0,PHI0,BETA,GAMMA,L,M,FSPH,J
&AT,JE,*60)
GOTO 70
60 WRITE(IUO1,80)
STOP
70 REFTH=REAL(FSPH)
XIMFTH=AIMAG(FSPH)
WRITE(IUO3,5) JE,JAT,L,M,REFTH,XIMFTH,DTHETA,DPHI,ECIN
50 CONTINUE
GOTO 40
90 WRITE(IUO1,100) JAT
STOP
40 CONTINUE
30 CONTINUE
20 CONTINUE
10 CONTINUE
CLOSE(IUO3)
1 FORMAT(5X,I1,2X,I2,2X,I4,2X,I2,2X,I3,2X,I3,2X,I3,2X,F8.2,2X,F8.2)
5 FORMAT(1X,I3,1X,I4,1X,I2,1X,I3,1X,F6.3,1X,F6.3,1X,F6.2,1X,F6.2,1X,
&F8.2)
80 FORMAT(15X,'<<<<< WRONG VALUE OF THETA0 : THE DENOMINATOR ','IS Z
&ERO >>>>>')
100 FORMAT(15X,'<<<<< THE VALUE OF L EST IS TOO LARGE FOR ATOM',' : '
&,I2,' >>>>>')
C
RETURN
C
END

View File

@ -0,0 +1,769 @@
C
C=======================================================================
C
SUBROUTINE TREAT_PHD(ISOM,NFICHLEC,JFICH,NP)
C
C This routine sums up the calculations corresponding to different
C absorbers or different planes when this has to be done
C (parameter ISOM in the input data file).
C
C Last modified : 24 Jan 2013
C
USE DIM_MOD
USE OUTUNITS_MOD
USE TYPEXP_MOD , DUMMY => SPECTRO
USE VALIN_MOD
USE VALFIN_MOD
C
PARAMETER(N_HEAD=5000,N_FILES=1000)
C
CHARACTER*3 SPECTRO
C
CHARACTER*13 OUTDATA
CHARACTER*72 HEAD(N_HEAD,N_FILES)
C
REAL TAB(NDIM_M,4)
REAL ECIN(NE_M),DTHETA(NTH_M),DPHI(NPH_M)
C
C
DATA JVOL,JTOT/0,-1/
C
REWIND IUO2
C
C Reading and storing the headers:
C
NHEAD=0
DO JLINE=1,N_HEAD
READ(IUO2,888) HEAD(JLINE,JFICH)
NHEAD=NHEAD+1
IF(HEAD(JLINE,JFICH)(1:6).EQ.' ') GOTO 333
ENDDO
C
333 CONTINUE
C
READ(IUO2,15) SPECTRO,OUTDATA
READ(IUO2,9) ISPIN,IDICHR,I_SO,ISFLIP,ICHKDIR,IPHI,ITHETA,IE,IPH_1
&,I_EXT
C
IF(I_EXT.EQ.2) THEN
IPH_1=0
ENDIF
C
IF(ISOM.EQ.0) THEN
C
C........ ISOM = 0 : case of independent input files .................
C
READ(IUO2,1) NPLAN,NEMET,NTHETA,NPHI,NE
C
IF(IPH_1.EQ.1) THEN
N_FIXED=NPHI
FIX0=PHI0
FIX1=PHI1
N_SCAN=NTHETA
ELSE
N_FIXED=NTHETA
FIX0=THETA0
FIX1=THETA1
IF(STEREO.EQ.'YES') THEN
NPHI=INT((PHI1-PHI0)*FLOAT(NTHETA-1)/(THETA1-THETA0)+0.0001)
&+1
IF(NTHETA*NPHI.GT.NPH_M) GOTO 37
ENDIF
N_SCAN=NPHI
ENDIF
C
IF(I_EXT.EQ.-1) THEN
N_SCAN=2*N_SCAN
ENDIF
C
IF((I_EXT.EQ.0).OR.(I_EXT.EQ.1)) THEN
NDP=NEMET*NTHETA*NPHI*NE
ELSEIF(I_EXT.EQ.-1) THEN
NDP=NEMET*NTHETA*NPHI*NE*2
ELSEIF(I_EXT.EQ.2) THEN
NDP=NEMET*NTHETA*NE
N_FIXED=NTHETA
N_SCAN=NPHI
IF((N_FIXED.GT.NTH_M).OR.(N_FIXED.GT.NPH_M)) GOTO 35
ENDIF
C
NTT=NPLAN*NDP
IF(NTT.GT.NDIM_M) GOTO 5
C
DO JPLAN=1,NPLAN
DO JEMET=1,NEMET
DO JE=1,NE
C
DO J_FIXED=1,N_FIXED
IF(N_FIXED.GT.1) THEN
XINCRF=FLOAT(J_FIXED-1)*(FIX1-FIX0)/FLOAT(N_FIXED-1)
ELSEIF(N_FIXED.EQ.1) THEN
XINCRF=0.
ENDIF
IF(IPH_1.EQ.1) THEN
JPHI=J_FIXED
ELSE
THETA=THETA0+XINCRF
JTHETA=J_FIXED
IF((ABS(THETA).GT.90.).AND.(I_EXT.NE.2)) GOTO 11
ENDIF
IF(STEREO.EQ.' NO') THEN
N_SCAN_R=N_SCAN
ELSE
RTHETA=THETA*0.017453
FIX_STEP=(FIX1-FIX0)/FLOAT(N_FIXED-1)
N_SCAN_R=INT((PHI1-PHI0)*SIN(RTHETA)/FIX_STEP+0.0001)+1
ENDIF
C
DO J_SCAN=1,N_SCAN_R
IF(IPH_1.EQ.1) THEN
JTHETA=J_SCAN
ELSE
JPHI=J_SCAN
ENDIF
C
JLIN=(JPLAN-1)*NDP + (JEMET-1)*NE*N_FIXED*N_SCAN + (JE-1)*N
&_FIXED*N_SCAN +(JTHETA-1)*NPHI + JPHI
C
IF(I_EXT.LE.0) THEN
IF(STEREO.EQ.' NO') THEN
JPHI2=JPHI
ELSE
JPHI2=(JTHETA-1)*NPHI+JPHI
ENDIF
ELSE
JPHI2=JTHETA
ENDIF
C
READ(IUO2,2) JPL
IF(JPLAN.EQ.JPL) THEN
BACKSPACE IUO2
IF(IDICHR.EQ.0) THEN
READ(IUO2,2) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE
&),TAB(JLIN,1),TAB(JLIN,2)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
READ(IUO2,25) TAB(JLIN2,1),TAB(JLIN2,2)
ENDIF
ELSE
READ(IUO2,22) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN(J
&E),TAB(JLIN,1),TAB(JLIN,2),TAB(JLIN,3),TAB(JLIN,4)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
READ(IUO2,22) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN
&(JE),TAB(JLIN2,1),TAB(JLIN2,2),TAB(JLIN2,3),TAB(JLIN2,4)
ENDIF
ENDIF
ELSE
BACKSPACE IUO2
DO JL=JLIN,JPLAN*NDP
TAB(JL,1)=0.0
TAB(JL,2)=0.0
TAB(JL,3)=0.0
TAB(JL,4)=0.0
ENDDO
GOTO 10
ENDIF
ENDDO
ENDDO
11 CONTINUE
ENDDO
ENDDO
10 CONTINUE
ENDDO
C
REWIND IUO2
C
C Skipping the NHEAD lines of headers before rewriting:
C
DO JLINE=1,NHEAD
READ(IUO2,888) HEAD(JLINE,JFICH)
ENDDO
C
WRITE(IUO2,15) SPECTRO,OUTDATA
WRITE(IUO2,9) ISPIN,IDICHR,I_SO,ISFLIP,ICHKDIR,IPHI,ITHETA,IE
WRITE(IUO2,8) NPHI,NTHETA,NE,NPLAN,ISOM
C
DO JE=1,NE
DO JTHETA=1,NTHETA
IF(STEREO.EQ.' NO') THEN
NPHI_R=NPHI
ELSE
RTHETA=DTHETA(JTHETA)*0.017453
FIX_STEP=(THETA1-THETA0)/FLOAT(NTHETA-1)
NPHI_R=INT((PHI1-PHI0)*SIN(RTHETA)/FIX_STEP+0.0001)+1
NPHI=INT((PHI1-PHI0)/FIX_STEP+0.0001)+1
ENDIF
DO JPHI=1,NPHI_R
TOTDIF_1=0.
TOTDIR_1=0.
VOLDIF_1=0.
VOLDIR_1=0.
TOTDIF_2=0.
TOTDIR_2=0.
VOLDIF_2=0.
VOLDIR_2=0.
IF(I_EXT.EQ.-1) THEN
TOTDIF2_1=0.
TOTDIR2_1=0.
VOLDIF2_1=0.
VOLDIR2_1=0.
TOTDIF2_2=0.
TOTDIR2_2=0.
VOLDIF2_2=0.
VOLDIR2_2=0.
ENDIF
C
DO JPLAN=1,NPLAN
C
SF_1=0.
SR_1=0.
SF_2=0.
SR_2=0.
IF(I_EXT.EQ.-1) THEN
SF2_1=0.
SR2_1=0.
SF2_2=0.
SR2_2=0.
ENDIF
C
DO JEMET=1,NEMET
JLIN=(JPLAN-1)*NDP + (JEMET-1)*NE*NTHETA*NPHI + (JE-1)*NTHE
&TA*NPHI +(JTHETA-1)*NPHI + JPHI
SF_1=SF_1+TAB(JLIN,2)
SR_1=SR_1+TAB(JLIN,1)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
SF2_1=SF2_1+TAB(JLIN2,2)
SR2_1=SR2_1+TAB(JLIN2,1)
ENDIF
IF(IDICHR.GE.1) THEN
SF_2=SF_2+TAB(JLIN,4)
SR_2=SR_2+TAB(JLIN,3)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
SF2_2=SF2_2+TAB(JLIN2,4)
SR2_2=SR2_2+TAB(JLIN2,3)
ENDIF
ENDIF
ENDDO
IF(I_EXT.LE.0) THEN
IF(STEREO.EQ.' NO') THEN
JPHI2=JPHI
ELSE
JPHI2=(JTHETA-1)*NPHI+JPHI
ENDIF
ELSE
JPHI2=JTHETA
ENDIF
IF(IDICHR.EQ.0) THEN
WRITE(IUO2,3) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),SR
&_1,SF_1
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,3) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),
&SR2_1,SF2_1
ENDIF
ELSE
WRITE(IUO2,23) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),S
&R_1,SF_1,SR_2,SF_2
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,23) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE)
&,SR2_1,SF2_1,SR2_2,SF2_2
ENDIF
ENDIF
IF(JPLAN.GT.NONVOL(JFICH)) THEN
VOLDIF_1=VOLDIF_1+SF_1
VOLDIR_1=VOLDIR_1+SR_1
IF(I_EXT.EQ.-1) THEN
VOLDIF2_1=VOLDIF2_1+SF2_1
VOLDIR2_1=VOLDIR2_1+SR2_1
ENDIF
IF(IDICHR.GE.1) THEN
VOLDIF_2=VOLDIF_2+SF_2
VOLDIR_2=VOLDIR_1+SR_2
IF(I_EXT.EQ.-1) THEN
VOLDIF2_2=VOLDIF2_2+SF2_2
VOLDIR2_2=VOLDIR2_1+SR2_2
ENDIF
ENDIF
ENDIF
TOTDIF_1=TOTDIF_1+SF_1
TOTDIR_1=TOTDIR_1+SR_1
IF(I_EXT.EQ.-1) THEN
TOTDIF2_1=TOTDIF2_1+SF2_1
TOTDIR2_1=TOTDIR2_1+SR2_1
ENDIF
IF(IDICHR.GE.1) THEN
TOTDIF_2=TOTDIF_2+SF_2
TOTDIR_2=TOTDIR_2+SR_2
IF(I_EXT.EQ.-1) THEN
TOTDIF2_2=TOTDIF2_2+SF2_2
TOTDIR2_2=TOTDIR2_2+SR2_2
ENDIF
ENDIF
ENDDO
IF(IDICHR.EQ.0) THEN
WRITE(IUO2,3) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),VOLD
&IR_1,VOLDIF_1
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,3) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),VO
&LDIR2_1,VOLDIF2_1
ENDIF
WRITE(IUO2,3) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),TOTD
&IR_1,TOTDIF_1
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,3) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),TO
&TDIR2_1,TOTDIF2_1
ENDIF
ELSE
WRITE(IUO2,23) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),VOL
&DIR_1,VOLDIF_1,VOLDIR_2,VOLDIF_2
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,23) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),V
&OLDIR2_1,VOLDIF2_1,VOLDIR2_2,VOLDIF2_2
ENDIF
WRITE(IUO2,23) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),TOT
&DIR_1,TOTDIF_1,TOTDIR_2,TOTDIF_2
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,23) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),T
&OTDIR2_1,TOTDIF2_1,TOTDIR2_2,TOTDIF2_2
ENDIF
ENDIF
ENDDO
ENDDO
ENDDO
C
ELSE
C
C........ ISOM not= 0 : multiple input files to be summed up ..........
C
READ(IUO2,7) NTHETA,NPHI,NE
C
IF(IPH_1.EQ.1) THEN
N_FIXED=NPHI
FIX0=PHI0
FIX1=PHI1
N_SCAN=NTHETA
ELSE
N_FIXED=NTHETA
FIX0=THETA0
FIX1=THETA1
IF(STEREO.EQ.'YES') THEN
NPHI=INT((PHI1-PHI0)*FLOAT(NTHETA-1)/(THETA1-THETA0)+0.0001)
&+1
IF(NTHETA*NPHI.GT.NPH_M) GOTO 37
ENDIF
N_SCAN=NPHI
ENDIF
C
IF(I_EXT.EQ.-1) THEN
N_SCAN=2*N_SCAN
ENDIF
C
IF((I_EXT.EQ.0).OR.(I_EXT.EQ.1)) THEN
NDP=NTHETA*NPHI*NE
ELSEIF(I_EXT.EQ.-1) THEN
NDP=NTHETA*NPHI*NE*2
ELSEIF(I_EXT.EQ.2) THEN
NDP=NTHETA*NE
N_FIXED=NTHETA
N_SCAN=NPHI
IF((N_FIXED.GT.NTH_M).OR.(N_FIXED.GT.NPH_M)) GOTO 35
ENDIF
C
NTT=NFICHLEC*NDP
IF(NTT.GT.NDIM_M) GOTO 5
C
IF(ISOM.EQ.1) THEN
NPLAN=NP
NF=NP
ELSEIF(ISOM.EQ.2) THEN
NEMET=NFICHLEC
NF=NFICHLEC
NPLAN=1
ENDIF
C
DO JF=1,NF
C
C Reading the headers for each file:
C
IF(JF.GT.1) THEN
DO JLINE=1,NHEAD
READ(IUO2,888) HEAD(JLINE,JF)
ENDDO
ENDIF
C
DO JE=1,NE
C
DO J_FIXED=1,N_FIXED
IF(N_FIXED.GT.1) THEN
XINCRF=FLOAT(J_FIXED-1)*(FIX1-FIX0)/FLOAT(N_FIXED-1)
ELSEIF(N_FIXED.EQ.1) THEN
XINCRF=0.
ENDIF
IF(IPH_1.EQ.1) THEN
JPHI=J_FIXED
ELSE
THETA=THETA0+XINCRF
JTHETA=J_FIXED
IF((ABS(THETA).GT.90.).AND.(I_EXT.NE.2)) GOTO 12
ENDIF
IF(STEREO.EQ.' NO') THEN
N_SCAN_R=N_SCAN
ELSE
RTHETA=THETA*0.017453
FIX_STEP=(FIX1-FIX0)/FLOAT(N_FIXED-1)
N_SCAN_R=INT((PHI1-PHI0)*SIN(RTHETA)/FIX_STEP+0.0001)+1
ENDIF
C
DO J_SCAN=1,N_SCAN_R
IF(IPH_1.EQ.1) THEN
JTHETA=J_SCAN
ELSE
JPHI=J_SCAN
ENDIF
C
JLIN=(JF-1)*NDP + (JE-1)*N_FIXED*N_SCAN +(JTHETA-1)*NPHI +
&JPHI
IF(I_EXT.LE.0) THEN
IF(STEREO.EQ.' NO') THEN
JPHI2=JPHI
ELSE
JPHI2=(JTHETA-1)*NPHI+JPHI
ENDIF
ELSE
JPHI2=JTHETA
ENDIF
C
IF(ISOM.EQ.1) THEN
READ(IUO2,2) JPL
IF(JF.EQ.JPL) THEN
BACKSPACE IUO2
IF(IDICHR.EQ.0) THEN
READ(IUO2,2) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN(
&JE),TAB(JLIN,1),TAB(JLIN,2)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
READ(IUO2,25) TAB(JLIN2,1),TAB(JLIN2,2)
ENDIF
ELSE
READ(IUO2,22) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN
&(JE),TAB(JLIN,1),TAB(JLIN,2),TAB(JLIN,3),TAB(JLIN,4)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
READ(IUO2,22) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),EC
&IN(JE),TAB(JLIN2,1),TAB(JLIN2,2),TAB(JLIN2,3),TAB(JLIN2,4)
ENDIF
ENDIF
ELSE
BACKSPACE IUO2
DO JLINE=1,NHEAD
BACKSPACE IUO2
ENDDO
DO JL=JLIN,JF*NDP
TAB(JL,1)=0.0
TAB(JL,2)=0.0
TAB(JL,3)=0.0
TAB(JL,4)=0.0
ENDDO
GOTO 13
ENDIF
ELSEIF(ISOM.EQ.2) THEN
IF(IDICHR.EQ.0) THEN
READ(IUO2,2) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE
&),TAB(JLIN,1),TAB(JLIN,2)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
READ(IUO2,25) TAB(JLIN2,1),TAB(JLIN2,2)
ENDIF
ELSE
READ(IUO2,22) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN(J
&E),TAB(JLIN,1),TAB(JLIN,2),TAB(JLIN,3),TAB(JLIN,4)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
READ(IUO2,22) JPL,JEM,DTHETA(JTHETA),DPHI(JPHI2),ECIN
&(JE),TAB(JLIN2,1),TAB(JLIN2,2),TAB(JLIN2,3),TAB(JLIN2,4)
ENDIF
ENDIF
ENDIF
ENDDO
12 CONTINUE
ENDDO
ENDDO
13 CONTINUE
ENDDO
C
REWIND IUO2
C
C Writing the headers:
C
DO JLINE=1,2
WRITE(IUO2,888) HEAD(JLINE,1)
ENDDO
DO JF=1,NFICHLEC
DO JLINE=3,6
WRITE(IUO2,888) HEAD(JLINE,JF)
ENDDO
WRITE(IUO2,888) HEAD(2,JF)
ENDDO
DO JLINE=7,NHEAD
WRITE(IUO2,888) HEAD(JLINE,1)
ENDDO
C
WRITE(IUO2,15) SPECTRO,OUTDATA
WRITE(IUO2,9) ISPIN,IDICHR,I_SO,ISFLIP,ICHKDIR,IPHI,ITHETA,IE
WRITE(IUO2,8) NPHI,NTHETA,NE,NPLAN,ISOM
C
IF(ISOM.EQ.1) THEN
C
DO JE=1,NE
C
DO JTHETA=1,NTHETA
IF(STEREO.EQ.' NO') THEN
NPHI_R=NPHI
ELSE
RTHETA=DTHETA(JTHETA)*0.017453
FIX_STEP=(THETA1-THETA0)/FLOAT(NTHETA-1)
NPHI_R=INT((PHI1-PHI0)*SIN(RTHETA)/FIX_STEP+0.0001)+1
NPHI=INT((PHI1-PHI0)/FIX_STEP+0.0001)+1
ENDIF
DO JPHI=1,NPHI_R
C
TOTDIF_1=0.
TOTDIR_1=0.
VOLDIF_1=0.
VOLDIR_1=0.
TOTDIF_2=0.
TOTDIR_2=0.
VOLDIF_2=0.
VOLDIR_2=0.
IF(I_EXT.EQ.-1) THEN
TOTDIF2_1=0.
TOTDIR2_1=0.
VOLDIF2_1=0.
VOLDIR2_1=0.
TOTDIF2_2=0.
TOTDIR2_2=0.
VOLDIF2_2=0.
VOLDIR2_2=0.
ENDIF
C
DO JPLAN=1,NPLAN
JF=JPLAN
C
JLIN=(JF-1)*NDP + (JE-1)*NTHETA*NPHI +(JTHETA-1)*NPHI + JP
&HI
C
SR_1=TAB(JLIN,1)
SF_1=TAB(JLIN,2)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
SF2_1=TAB(JLIN2,2)
SR2_1=TAB(JLIN2,1)
ENDIF
IF(I_EXT.LE.0) THEN
IF(STEREO.EQ.' NO') THEN
JPHI2=JPHI
ELSE
JPHI2=(JTHETA-1)*NPHI+JPHI
ENDIF
ELSE
JPHI2=JTHETA
ENDIF
IF(IDICHR.EQ.0) THEN
WRITE(IUO2,3) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),
&SR_1,SF_1
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,3) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE
&),SR2_1,SF2_1
ENDIF
ELSE
SR_2=TAB(JLIN,3)
SF_2=TAB(JLIN,4)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
SF2_2=TAB(JLIN2,4)
SR2_2=TAB(JLIN2,3)
ENDIF
WRITE(IUO2,23) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE)
&,SR_1,SF_1,SR_2,SF_2
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,23) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(J
&E),SR2_1,SF2_1,SR2_2,SF2_2
ENDIF
ENDIF
IF(NONVOL(JPLAN).EQ.0) THEN
VOLDIF_1=VOLDIF_1+SF_1
VOLDIR_1=VOLDIR_1+SR_1
IF(I_EXT.EQ.-1) THEN
VOLDIF2_1=VOLDIF2_1+SF2_1
VOLDIR2_1=VOLDIR2_1+SR2_1
ENDIF
IF(IDICHR.GE.1) THEN
VOLDIF_2=VOLDIF_2+SF_2
VOLDIR_2=VOLDIR_2+SR_2
IF(I_EXT.EQ.-1) THEN
VOLDIF2_2=VOLDIF2_2+SF2_2
VOLDIR2_2=VOLDIR2_1+SR2_2
ENDIF
ENDIF
ENDIF
TOTDIF_1=TOTDIF_1+SF_1
TOTDIR_1=TOTDIR_1+SR_1
IF(I_EXT.EQ.-1) THEN
TOTDIF2_1=TOTDIF2_1+SF2_1
TOTDIR2_1=TOTDIR2_1+SR2_1
ENDIF
IF(IDICHR.GE.1) THEN
TOTDIF_2=TOTDIF_2+SF_2
TOTDIR_2=TOTDIR_2+SR_2
IF(I_EXT.EQ.-1) THEN
TOTDIF2_2=TOTDIF2_2+SF2_2
TOTDIR2_2=TOTDIR2_2+SR2_2
ENDIF
ENDIF
ENDDO
C
IF(IDICHR.EQ.0) THEN
WRITE(IUO2,3) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),VO
&LDIR_1,VOLDIF_1
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,3) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),
&VOLDIR2_1,VOLDIF2_1
ENDIF
WRITE(IUO2,3) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),TO
&TDIR_1,TOTDIF_1
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,3) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),
&TOTDIR2_1,TOTDIF2_1
ENDIF
ELSE
WRITE(IUO2,23) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),V
&OLDIR_1,VOLDIF_1,VOLDIR_2,VOLDIF_2
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,23) JVOL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE)
&,VOLDIR2_1,VOLDIF2_1,VOLDIR2_2,VOLDIF2_2
ENDIF
WRITE(IUO2,23) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),T
&OTDIR_1,TOTDIF_1,TOTDIR_2,TOTDIF_2
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,23) JTOT,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE)
&,TOTDIR2_1,TOTDIF2_1,TOTDIR2_2,TOTDIF2_2
ENDIF
ENDIF
C
ENDDO
ENDDO
ENDDO
ELSEIF(ISOM.EQ.2) THEN
DO JE=1,NE
C
DO JTHETA=1,NTHETA
IF(STEREO.EQ.' NO') THEN
NPHI_R=NPHI
ELSE
RTHETA=DTHETA(JTHETA)*0.017453
FIX_STEP=(THETA1-THETA0)/FLOAT(NTHETA-1)
NPHI_R=INT((PHI1-PHI0)*SIN(RTHETA)/FIX_STEP+0.0001)+1
NPHI=INT((PHI1-PHI0)/FIX_STEP+0.0001)+1
ENDIF
DO JPHI=1,NPHI_R
C
SF_1=0.
SR_1=0.
SF_2=0.
SR_2=0.
IF(I_EXT.EQ.-1) THEN
SF2_1=0.
SR2_1=0.
SF2_2=0.
SR2_2=0.
ENDIF
C
DO JEMET=1,NEMET
JF=JEMET
C
JLIN=(JF-1)*NDP + (JE-1)*NTHETA*NPHI +(JTHETA-1)*NPHI + J
&PHI
C
SF_1=SF_1+TAB(JLIN,2)
SR_1=SR_1+TAB(JLIN,1)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
SF2_1=SF2_1+TAB(JLIN2,2)
SR2_1=SR2_1+TAB(JLIN2,1)
ENDIF
IF(IDICHR.GE.1) THEN
SF_2=SF_2+TAB(JLIN,4)
SR_2=SR_2+TAB(JLIN,3)
IF(I_EXT.EQ.-1) THEN
JLIN2=NTT+JLIN
SF2_2=SF2_2+TAB(JLIN2,4)
SR2_2=SR2_2+TAB(JLIN2,3)
ENDIF
ENDIF
ENDDO
IF(I_EXT.LE.0) THEN
IF(STEREO.EQ.' NO') THEN
JPHI2=JPHI
ELSE
JPHI2=(JTHETA-1)*NPHI+JPHI
ENDIF
ELSE
JPHI2=JTHETA
ENDIF
IF(IDICHR.EQ.0) THEN
WRITE(IUO2,3) JPL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),SR
&_1,SF_1
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,3) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE
&),SR2_1,SF2_1
ENDIF
ELSE
WRITE(IUO2,23) JPL,DTHETA(JTHETA),DPHI(JPHI2),ECIN(JE),S
&R_1,SF_1,SR_2,SF_2
IF(I_EXT.EQ.-1) THEN
WRITE(IUO2,23) JPLAN,DTHETA(JTHETA),DPHI(JPHI2),ECIN(J
&E),SR2_1,SF2_1,SR2_2,SF2_2
ENDIF
ENDIF
ENDDO
ENDDO
ENDDO
ENDIF
ENDIF
C
GOTO 6
C
5 WRITE(IUO1,4)
STOP
35 WRITE(IUO1,36) N_FIXED
STOP
37 WRITE(IUO1,38) NTHETA*NPHI
STOP
C
1 FORMAT(2X,I3,2X,I2,2X,I4,2X,I4,2X,I4)
2 FORMAT(2X,I3,2X,I2,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6)
3 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6)
4 FORMAT(//,8X,'<<<<<<<<<< DIMENSION OF THE ARRAYS TOO SMALL ','IN
&THE TREAT_PHD SUBROUTINE - INCREASE NDIM_M ','>>>>>>>>>>')
7 FORMAT(I4,2X,I4,2X,I4)
8 FORMAT(I4,2X,I4,2X,I4,2X,I3,2X,I1)
9 FORMAT(9(2X,I1),2X,I2)
15 FORMAT(2X,A3,11X,A13)
22 FORMAT(2X,I3,2X,I2,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6,2X,E1
&2.6,2X,E12.6)
23 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6,2X,E12.6,2X
&,E12.6)
25 FORMAT(37X,E12.6,2X,E12.6)
36 FORMAT(//,4X,'<<<<<<<<<< DIMENSION OF NTH_M OR NPH_M TOO SMALL ',
&'IN THE INCLUDE FILE >>>>>>>>>>',/,4X,'<<<<<<<<<<
&SHOULD BE AT LEAST ',I6,' >>>>>>>>>>')
38 FORMAT(//,8X,'<<<<<<<<<< DIMENSION OF NPH_M TOO SMALL ','IN THE I
&NCLUDE FILE >>>>>>>>>>',/,8X,'<<<<<<<<<< SHOULD BE AT
&LEAST ',I6,' >>>>>>>>>>')
888 FORMAT(A72)
C
6 RETURN
C
END

View File

@ -0,0 +1,335 @@
C
C=======================================================================
C
SUBROUTINE WEIGHT_SUM(ISOM,I_EXT,I_EXT_A,JEL)
C
C This subroutine performs a weighted sum of the results
C corresponding to different directions of the detector.
C The directions and weights are read from an external input file
C
C JEL is the electron undetected (i.e. for which the outgoing
C directions are integrated over the unit sphere). It is always
C 1 for one electron spectroscopies (PHD). For APECS, It can be
C 1 (photoelectron) or 2 (Auger electron) or even 0 (no electron
C detected)
C
C Last modified : 31 Jan 2007
C
USE DIM_MOD
USE INFILES_MOD
USE INUNITS_MOD
USE OUTUNITS_MOD
C
C
PARAMETER(N_MAX=5810,NPM=20)
C
REAL*4 W(N_MAX),W_A(N_MAX),ECIN(NE_M)
REAL*4 DTHETA(N_MAX),DPHI(N_MAX),DTHETAA(N_MAX),DPHIA(N_MAX)
REAL*4 SR_1,SF_1,SR_2,SF_2
REAL*4 SUMR_1(NPM,NE_M,N_MAX),SUMR_2(NPM,NE_M,N_MAX)
REAL*4 SUMF_1(NPM,NE_M,N_MAX),SUMF_2(NPM,NE_M,N_MAX)
C
CHARACTER*3 SPECTRO,SPECTRO2
CHARACTER*5 LIKE
CHARACTER*13 OUTDATA
C
C
C
C
DATA JVOL,JTOT/0,-1/
DATA LIKE /'-like'/
C
REWIND IUO2
C
READ(IUO2,15) SPECTRO,OUTDATA
IF(SPECTRO.NE.'APC') THEN
READ(IUO2,9) ISPIN,IDICHR,I_SO,ISFLIP,ICHKDIR,IPHI,ITHETA,IE
READ(IUO2,8) NPHI,NTHETA,NE,NPLAN,ISOM
SPECTRO2='XAS'
ELSE
READ(IUO2,9) ISPIN,IDICHR,I_SO,ISFLIP,ICHKDIR,IPHI,ITHETA,IE
READ(IUO2,9) ISPIN_A,IDICHR_A,I_SO_A,ISFLIP_A,ICHKDIR_A,IPHI_A,I
&THETA_A,IE_A
READ(IUO2,8) NPHI,NTHETA,NE,NPLAN,ISOM
READ(IUO2,8) NPHI_A,NTHETA_A
IF(JEL.EQ.1) THEN
SPECTRO2='AED'
ELSEIF(JEL.EQ.2) THEN
SPECTRO2='PHD'
ELSEIF(JEL.EQ.0) THEN
SPECTRO2='XAS'
ENDIF
ENDIF
C
IF(NPLAN.GT.NPM) THEN
WRITE(IUO1,4) NPLAN+2
STOP
ENDIF
C
C Reading the number of angular points
C
IF(SPECTRO.NE.'APC') THEN
OPEN(UNIT=IUI6, FILE=INFILE6, STATUS='OLD')
READ(IUI6,1) N_POINTS
READ(IUI6,5) I_DIM,N_DUM1,N_DUM2
N_POINTS_A=1
ELSE
IF(JEL.EQ.1) THEN
OPEN(UNIT=IUI6, FILE=INFILE6, STATUS='OLD')
READ(IUI6,1) N_POINTS
READ(IUI6,5) I_DIM,N_DUM1,N_DUM2
IF(I_EXT_A.EQ.0) THEN
N_POINTS_A=NTHETA_A*NPHI_A
ELSE
OPEN(UNIT=IUI9, FILE=INFILE9, STATUS='OLD')
READ(IUI9,1) N_POINTS_A
READ(IUI9,5) I_DIM,N_DUM1,N_DUM2
ENDIF
NTHETA0=NTHETA_A
NPHI0=NPHI_A
ELSEIF(JEL.EQ.2) THEN
OPEN(UNIT=IUI9, FILE=INFILE9, STATUS='OLD')
READ(IUI9,1) N_POINTS_A
READ(IUI9,5) I_DIM,N_DUM1,N_DUM2
IF(I_EXT.EQ.0) THEN
N_POINTS=NTHETA*NPHI
ELSE
OPEN(UNIT=IUI6, FILE=INFILE6, STATUS='OLD')
READ(IUI6,1) N_POINTS
READ(IUI6,5) I_DIM,N_DUM1,N_DUM2
ENDIF
NTHETA0=NTHETA
NPHI0=NPHI
ELSEIF(JEL.EQ.0) THEN
OPEN(UNIT=IUI6, FILE=INFILE6, STATUS='OLD')
OPEN(UNIT=IUI9, FILE=INFILE9, STATUS='OLD')
READ(IUI6,1) N_POINTS
READ(IUI9,1) N_POINTS_A
READ(IUI6,5) I_DIM,N_DUM1,N_DUM2
READ(IUI9,5) I_DIM,N_DUM1,N_DUM2
ENDIF
ENDIF
C
IF(SPECTRO.NE.'APC') THEN
NANGLE=1
ELSE
IF(JEL.EQ.1) THEN
NANGLE=N_POINTS_A
ELSEIF(JEL.EQ.2) THEN
NANGLE=N_POINTS
ELSEIF(JEL.EQ.0) THEN
NANGLE=1
ENDIF
ENDIF
C
C Initialization of the arrays
C
DO JE=1,NE
DO JANGLE=1,NANGLE
DO JPLAN=1,NPLAN+2
SUMR_1(JPLAN,JE,JANGLE)=0.
SUMF_1(JPLAN,JE,JANGLE)=0.
IF(IDICHR.GT.0) THEN
SUMR_2(JPLAN,JE,JANGLE)=0.
SUMF_2(JPLAN,JE,JANGLE)=0.
ENDIF
ENDDO
ENDDO
ENDDO
C
C Reading of the data to be angle integrated
C
DO JE=1,NE
C
DO JANGLE=1,N_POINTS
IF(I_EXT.NE.0) READ(IUI6,2) TH,PH,W(JANGLE)
DO JANGLE_A=1,N_POINTS_A
IF((I_EXT_A.NE.0).AND.(JANGLE.EQ.1)) THEN
READ(IUI9,2) THA,PHA,W_A(JANGLE_A)
ENDIF
C
DO JPLAN=1,NPLAN+2
C
IF(IDICHR.EQ.0) THEN
IF(SPECTRO.NE.'APC') THEN
READ(IUO2,3) JDUM,DTHETA(JANGLE),DPHI(JANGLE),ECIN(JE)
&,SR_1,SF_1
ELSE
READ(IUO2,13) JDUM,DTHETA(JANGLE),DPHI(JANGLE),ECIN(JE
&),DTHETAA(JANGLE_A),DPHIA(JANGLE_A),SR_1,SF_1
ENDIF
ELSE
IF(SPECTRO.NE.'APC') THEN
READ(IUO2,23) JDUM,DTHETA(JANGLE),DPHI(JANGLE),ECIN(JE
&),SR_1,SF_1,SR_2,SF_2
ELSE
READ(IUO2,24) JDUM,DTHETA(JANGLE),DPHI(JANGLE),ECIN(JE
&),DTHETAA(JANGLE_A),DPHIA(JANGLE_A),SR_1,SF_1,SR_2,SF_2
ENDIF
ENDIF
C
IF(JEL.EQ.1) THEN
SUMR_1(JPLAN,JE,JANGLE_A)=SUMR_1(JPLAN,JE,JANGLE_A)+SR_1
&*W(JANGLE)
SUMF_1(JPLAN,JE,JANGLE_A)=SUMF_1(JPLAN,JE,JANGLE_A)+SF_1
&*W(JANGLE)
ELSEIF(JEL.EQ.2) THEN
SUMR_1(JPLAN,JE,JANGLE)=SUMR_1(JPLAN,JE,JANGLE)+SR_1*W_A
&(JANGLE_A)
SUMF_1(JPLAN,JE,JANGLE)=SUMF_1(JPLAN,JE,JANGLE)+SF_1*W_A
&(JANGLE_A)
ELSEIF(JEL.EQ.0) THEN
SUMR_1(JPLAN,JE,1)=SUMR_1(JPLAN,JE,1)+SR_1*W(JANGLE)*W_A
&(JANGLE_A)
SUMF_1(JPLAN,JE,1)=SUMF_1(JPLAN,JE,1)+SF_1*W(JANGLE)*W_A
&(JANGLE_A)
ENDIF
IF(IDICHR.GT.0) THEN
IF(JEL.EQ.1) THEN
SUMR_2(JPLAN,JE,JANGLE_A)=SUMR_2(JPLAN,JE,JANGLE_A)+SR
&_2*W(JANGLE)
SUMF_2(JPLAN,JE,JANGLE_A)=SUMF_2(JPLAN,JE,JANGLE_A)+SF
&_2*W(JANGLE)
ELSEIF(JEL.EQ.2) THEN
SUMR_2(JPLAN,JE,JANGLE)=SUMR_2(JPLAN,JE,JANGLE)+SR_2*W
&_A(JANGLE_A)
SUMF_2(JPLAN,JE,JANGLE)=SUMF_2(JPLAN,JE,JANGLE)+SF_2*W
&_A(JANGLE_A)
ELSEIF(JEL.EQ.0) THEN
SUMR_2(JPLAN,JE,1)=SUMR_2(JPLAN,JE,1)+SR_2*W(JANGLE)*W
&_A(JANGLE_A)
SUMF_2(JPLAN,JE,1)=SUMF_2(JPLAN,JE,1)+SF_2*W(JANGLE)*W
&_A(JANGLE_A)
ENDIF
ENDIF
C
ENDDO
C
ENDDO
IF(I_EXT_A.NE.0) THEN
REWIND IUI9
READ(IUI9,1) NDUM
READ(IUI9,1) NDUM
ENDIF
ENDDO
C
IF(I_EXT.NE.0) THEN
REWIND IUI6
READ(IUI6,1) NDUM
READ(IUI6,1) NDUM
ENDIF
ENDDO
C
CLOSE(IUI6)
CLOSE(IUI9)
REWIND IUO2
C
WRITE(IUO2,16) SPECTRO2,LIKE,SPECTRO,OUTDATA
IF((SPECTRO.NE.'APC').OR.(JEL.EQ.0)) THEN
WRITE(IUO2,19) ISPIN,IDICHR,I_SO,ISFLIP
WRITE(IUO2,18) NE,NPLAN,ISOM
ELSEIF(JEL.EQ.1) THEN
WRITE(IUO2,20) ISPIN_A,IDICHR_A,I_SO_A,ISFLIP_A,ICHKDIR_A,IPHI_A
&,ITHETA_A,IE_A
WRITE(IUO2,21) NPHI0,NTHETA0,NE,NPLAN,ISOM
ELSEIF(JEL.EQ.2) THEN
WRITE(IUO2,20) ISPIN,IDICHR,I_SO,ISFLIP,ICHKDIR,IPHI,ITHETA,IE
WRITE(IUO2,21) NPHI0,NTHETA0,NE,NPLAN,ISOM
ENDIF
C
DO JE=1,NE
DO JANGLE=1,NANGLE
IF(SPECTRO.EQ.'APC') THEN
IF(JEL.EQ.1) THEN
THETA=DTHETAA(JANGLE)
PHI=DPHIA(JANGLE)
ELSEIF(JEL.EQ.2) THEN
THETA=DTHETA(JANGLE)
PHI=DPHI(JANGLE)
ENDIF
ENDIF
C
DO JPLAN=1,NPLAN
IF(IDICHR.EQ.0) THEN
IF((SPECTRO.NE.'APC').OR.(JEL.EQ.0)) THEN
WRITE(IUO2,33) JPLAN,ECIN(JE),SUMR_1(JPLAN,JE,JANGLE),SU
&MF_1(JPLAN,JE,JANGLE)
ELSE
WRITE(IUO2,34) JPLAN,THETA,PHI,ECIN(JE),SUMR_1(JPLAN,JE,
&JANGLE),SUMF_1(JPLAN,JE,JANGLE)
ENDIF
ELSE
IF((SPECTRO.NE.'APC').OR.(JEL.EQ.0)) THEN
WRITE(IUO2,43) JPLAN,ECIN(JE),SUMR_1(JPLAN,JE,JANGLE),SU
&MF_1(JPLAN,JE,JANGLE),SUMR_2(JPLAN,JE,JANGLE),SUMF_2(JPLAN,JE,JANG
&LE)
ELSE
WRITE(IUO2,44) JPLAN,THETA,PHI,ECIN(JE),SUMR_1(JPLAN,JE,
&JANGLE),SUMF_1(JPLAN,JE,JANGLE),SUMR_2(JPLAN,JE,JANGLE),SUMF_2(JPL
&AN,JE,JANGLE)
ENDIF
ENDIF
ENDDO
C
IF(IDICHR.EQ.0) THEN
IF((SPECTRO.NE.'APC').OR.(JEL.EQ.0)) THEN
WRITE(IUO2,33) JVOL,ECIN(JE),SUMR_1(NPLAN+1,JE,JANGLE),SUM
&F_1(NPLAN+1,JE,JANGLE)
WRITE(IUO2,33) JTOT,ECIN(JE),SUMR_1(NPLAN+2,JE,JANGLE),SUM
&F_1(NPLAN+2,JE,JANGLE)
ELSE
WRITE(IUO2,34) JVOL,THETA,PHI,ECIN(JE),SUMR_1(NPLAN+1,JE,J
&ANGLE),SUMF_1(NPLAN+1,JE,JANGLE)
WRITE(IUO2,34) JTOT,THETA,PHI,ECIN(JE),SUMR_1(NPLAN+2,JE,J
&ANGLE),SUMF_1(NPLAN+2,JE,JANGLE)
ENDIF
ELSE
IF((SPECTRO.NE.'APC').OR.(JEL.EQ.0)) THEN
WRITE(IUO2,43) JVOL,ECIN(JE),SUMR_1(NPLAN+1,JE,JANGLE),SUM
&F_1(NPLAN+1,JE,JANGLE),SUMR_2(NPLAN+1,JE,JANGLE),SUMF_2(NPLAN+1,JE
&,JANGLE)
WRITE(IUO2,43) JTOT,ECIN(JE),SUMR_1(NPLAN+2,JE,JANGLE),SUM
&F_1(NPLAN+2,JE,JANGLE),SUMR_2(NPLAN+2,JE,JANGLE),SUMF_2(NPLAN+2,JE
&,JANGLE)
ELSE
WRITE(IUO2,44) JVOL,THETA,PHI,ECIN(JE),SUMR_1(NPLAN+1,JE,J
&ANGLE),SUMF_1(NPLAN+1,JE,JANGLE),SUMR_2(NPLAN+1,JE,JANGLE),SUMF_2(
&NPLAN+1,JE,JANGLE)
WRITE(IUO2,44) JTOT,THETA,PHI,ECIN(JE),SUMR_1(NPLAN+2,JE,J
&ANGLE),SUMF_1(NPLAN+2,JE,JANGLE),SUMR_2(NPLAN+2,JE,JANGLE),SUMF_2(
&NPLAN+2,JE,JANGLE)
ENDIF
ENDIF
C
ENDDO
ENDDO
C
1 FORMAT(13X,I4)
2 FORMAT(15X,F8.3,3X,F8.3,3X,E12.6)
3 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6)
4 FORMAT(//,8X,'<<<<<<<<<< DIMENSION OF THE ARRAYS TOO SMALL ','IN
&THE WEIGHT_SUM SUBROUTINE - INCREASE NPM TO ',I3,'>>>>>>>>>>')
5 FORMAT(6X,I1,1X,I3,3X,I3)
8 FORMAT(I4,2X,I4,2X,I4,2X,I3,2X,I1)
9 FORMAT(9(2X,I1),2X,I2)
13 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,F6.2,2X,F6.2,2X,E12.6,2X,E
&12.6)
15 FORMAT(2X,A3,11X,A13)
16 FORMAT(2X,A3,A5,1X,A3,2X,A13)
18 FORMAT(I4,2X,I3,2X,I1)
19 FORMAT(4(2X,I1))
20 FORMAT(8(2X,I1))
21 FORMAT(I4,2X,I4,2X,I4,2X,I3,2X,I1)
23 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6,2X,E12.6,2X
&,E12.6)
24 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,F6.2,2X,F6.2,2X,E12.6,2X,E
&12.6,2X,E12.6,2X,E12.6)
33 FORMAT(2X,I3,2X,F8.2,2X,E12.6,2X,E12.6)
34 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6)
43 FORMAT(2X,I3,2X,F8.2,2X,E12.6,2X,E12.6,2X,E12.6,2X,E12.6)
44 FORMAT(2X,I3,2X,F6.2,2X,F6.2,2X,F8.2,2X,E12.6,2X,E12.6,2X,E12.6,2X
&,E12.6)
C
RETURN
C
END

View File

@ -2,7 +2,7 @@ memalloc_src := memalloc/dim_mod.f memalloc/modules.f memalloc/all
cluster_gen_src := $(wildcard cluster_gen/*.f)
common_sub_src := $(wildcard common_sub/*.f)
renormalization_src := $(wildcard renormalization/*.f)
phd_mi_noso_nosp_nosym_src := $(wildcard phd_mi_noso_nosp_nosym/*.f)
phd_mi_noso_nosp_nosym_src := $(filter-out phd_mi_noso_nosp_nosym/lapack_axb.f, $(wildcard phd_mi_noso_nosp_nosym/*.f))
SRCS = $(memalloc_src) $(cluster_gen_src) $(common_sub_src) $(renormalization_src) $(phd_mi_noso_nosp_nosym_src)
MAIN_F = phd_mi_noso_nosp_nosym/main.f

View File

@ -115,7 +115,7 @@ C Renormalization of the path
C
IF(I_REN.GE.1) THEN
COEF=COEF*C_REN(JORDP)
write(354,*) JORDP,C_REN(JORDP)
C write(354,*) JORDP,C_REN(JORDP)
ENDIF
C
C Call of the subroutines used for the R-A termination matrix

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -16,8 +17,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/tests.py
# Last modified: ven. 10 avril 2020 17:33:28
# Committed by : "Sylvain Tricot <sylvain.tricot@univ-rennes1.fr>"
# Last modified: Mon, 27 Sep 2021 17:49:48 +0200
# Committed by : sylvain tricot <sylvain.tricot@univ-rennes1.fr>
import os

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -18,8 +19,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/utils.py
# Last modified: Thu, 06 Oct 2022 18:19:16 +0200
# Committed by : Sylvain Tricot <sylvain.tricot@univ-rennes1.fr> 1665073156 +0200
# Last modified: Thu, 06 Oct 2022 18:27:24 +0200
# Committed by : Sylvain Tricot <sylvain.tricot@univ-rennes1.fr> 1665073644 +0200
"""
@ -70,7 +71,7 @@ class ForeignPotential(object):
self.phagen_data = {'types': []}
def write(self, filename, prototypical_atoms):
LOGGER.debug(f"Writing Phagen input potential file: {filename}")
LOGGER.debug("Writing Phagen input potential file: {}".format(filename))
def DEPRECATEDappend_atom_potential(atom):
Z = atom.number
@ -81,8 +82,8 @@ class ForeignPotential(object):
itypes.append(i)
# Check now that we have only one type in the list
# otherwise we do not know yet how to deal with this.
assert len(itypes) > 0, f"Cannot find the data for atom with Z={Z}"
assert len(itypes) == 1, f"Too many datasets for atom with Z={Z}"
assert len(itypes) > 0, "Cannot find the data for atom with Z={}".format(Z)
assert len(itypes) == 1, "Too many datasets for atom with Z={}".format(Z)
# So far so good, let's write the block
t = self.phagen_data['types'][itypes[0]]
s = "{:<7d}{:<10d}{:1.4f}\n".format(
@ -95,7 +96,7 @@ class ForeignPotential(object):
def append_atom_potential(atom):
line_fmt = "{:+1.8e} " * 4 + "\n"
atom_type = atom.get('atom_type')
assert atom_type != None, f"Unable get the atom type!"
assert atom_type != None, "Unable get the atom type!"
for t in self.phagen_data['types']:
if t['atom_type'] == atom_type:
s = "{:<7d}{:<10d}{:1.4f}\n".format(
@ -138,7 +139,7 @@ class SPRKKRPotential(ForeignPotential):
self.potfile = potfile
self.load_sprkkr_atom_types()
for f in exported_files:
LOGGER.info(f"Loading file {f}...")
LOGGER.info("Loading file {}...".format(f))
# get the IT from the filename
m=re.match('SPRKKR-IT_(?P<IT>\d+)-PHAGEN.*', os.path.basename(f))
it = int(m.group('IT'))
@ -192,7 +193,7 @@ class SPRKKRPotential(ForeignPotential):
return data
# load info in *.pot file
LOGGER.info(f"Loading SPRKKR *.pot file {self.potfile}...")
LOGGER.info("Loading SPRKKR *.pot file {}...".format(self.potfile))
with open(self.potfile, 'r') as fd:
content = fd.read()
@ -233,7 +234,7 @@ class SPRKKRPotential(ForeignPotential):
IT = occupation['ITOQ']
atom = self.atoms[i]
atom.set('atom_type', IT)
LOGGER.debug(f"Site #{IQ} is type #{IT}, atom {atom}")
LOGGER.debug("Site #{} is type #{}, atom {}".format(IQ, IT, atom))
@ -314,34 +315,13 @@ def cut_cylinder(atoms, axis="z", radius=None):
:return: The modified atom cluster
:rtype: ase.Atoms
"""
if radius is None:
raise ValueError("radius not set")
new_atoms = atoms.copy()
dims = {"x": 0, "y": 1, "z": 2}
if axis in dims:
axis = dims[axis]
else:
raise ValueError("axis not valid, must be 'x','y', or 'z'")
del_list = []
for index, position in enumerate(new_atoms.positions):
# calculating the distance of the atom to the given axis
r = 0
for dim in range(3):
if dim != axis:
r = r + position[dim]**2
r = np.sqrt(r)
if r > radius:
del_list.append(index)
del_list.reverse()
for index in del_list:
del new_atoms[index]
return new_atoms
if axis not in ('z',):
raise ValueError("axis value != 'z' is not supported yet.")
X, Y, Z = atoms.positions.T
R = np.sqrt(X**2 + Y **2)
T = np.arctan2(Y, X)
i = np.where(R <= radius)[0]
return atoms[i]
def cut_cone(atoms, radius, z=0):
@ -429,11 +409,15 @@ def cut_plane(atoms, x=None, y=None, z=None):
dim_values = np.array(dim_values)
def constraint(coordinates):
return np.all(np.logical_and(coordinates >= dim_values[:, 0],
coordinates <= dim_values[:, 1]))
X, Y, Z = atoms.positions.T
i0 = np.where(X >= dim_values[0, 0])[0]
i1 = np.where(X[i0] <= dim_values[0, 1])[0]
i2 = np.where(Y[i0][i1] >= dim_values[1, 0])[0]
i3 = np.where(Y[i0][i1][i2] <= dim_values[1, 1])[0]
i4 = np.where(Z[i0][i1][i2][i3] >= dim_values[2, 0])[0]
i5 = np.where(Z[i0][i1][i2][i3][i4] <= dim_values[2, 1])[0]
indices = np.arange(len(atoms))[i0][i1][i2][i3][i4][i5]
indices = np.where(list(map(constraint, atoms.positions)))[0]
return atoms[indices]

View File

@ -1,4 +1,5 @@
#!/usr/bin/env python
# coding: utf-8
#
# Copyright © 2016-2020 - Rennes Physics Institute
#
@ -16,8 +17,8 @@
# along with this msspec. If not, see <http://www.gnu.org/licenses/>.
#
# Source file : src/msspec/version.py
# Last modified: Thu, 06 Oct 2022 18:19:16 +0200
# Committed by : Sylvain Tricot <sylvain.tricot@univ-rennes1.fr> 1665073156 +0200
# Last modified: Wed, 26 Oct 2022 17:15:24 +0200
# Committed by : Sylvain Tricot <sylvain.tricot@univ-rennes1.fr> 1666797324 +0200
import os
@ -26,28 +27,27 @@ from importlib.metadata import version
import subprocess
# find the version number
# 1- If it fails, try to read it from the distribution file
# 2- Try to read it from the git info
# 3- If it fails, try to read it from the VERSION file
# 1- Try to read it from the git info
# 2- If it fails, try to read it from the VERSION file
# 3- If it fails, try to read it from the distribution file
PKGNAME = 'msspec'
try:
__version__ = version(PKGNAME)
cmd = ["git describe|sed 's/-\([0-9]\+\)-.*/.dev\\1/g'"]
result = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.DEVNULL, shell=True)
__version__ = result.stdout.decode('utf-8').strip()
if __version__ == "":
raise
except Exception as err:
try:
p = subprocess.run(["git", "describe"], capture_output=True, text=True)
if p.stdout not in ("", None):
__version__ = p.stdout.strip()
else:
raise NameError("git describe failed!")
thisfile_path = os.path.abspath(__file__)
thisfile_dir = os.path.dirname(thisfile_path)
versionfile = os.path.join(thisfile_dir, "./VERSION")
with open(versionfile, "r") as fd:
__version__ = fd.readline().strip()
except Exception as err:
try:
thisfile_path = os.path.abspath(__file__)
thisfile_dir = os.path.dirname(thisfile_path)
versionfile = os.path.join(thisfile_dir, "../VERSION")
with open(versionfile, "r") as fd:
__version__ = fd.readline().strip()
__version__ = version(PKGNAME)
except Exception as err:
print("Unable to get the version number!")
__version__ = "9.9.9"
__version__ = "0.0.0"

View File

@ -1,6 +1,6 @@
PYTHON = python
PYTHON = python3
PYMAJ = 3
PYMIN = 6
PYMIN = 5
FC = gfortran
F2PY = f2py3 --f77exec=$(FC) --f90exec=$(FC)
@ -31,7 +31,7 @@ IFORT_FFLAGS_DBG =
################################################################################
# F2PY CONFIGURATION #
################################################################################
F2PYFLAGS = --opt=-O2
F2PYFLAGS = --opt=-O2 -llapack -larpack
F2PYFLAGS_DBG = --debug-capi --debug
################################################################################
@ -41,7 +41,7 @@ F2PYFLAGS_DBG = --debug-capi --debug
# /!\ DO NOT EDIT BELOW THAT LINE (unlesss you know what you're doing...) #
# CORE CONFIGURATION #
################################################################################
VERSION:=$(shell git describe)
VERSION:=$(shell git describe|sed 's/-\([0-9]\+\)-.*/.dev\1/g')
VENV_PATH := $(INSTALL_PREFIX)/src/msspec_venv_$(VERSION)
@ -103,7 +103,7 @@ endif
FFLAGS = $($(PREFIX)_FFLAGS$(SUFFIX))
OBJS = $(addprefix $(BUILDDIR)/, $(patsubst %.f,%.o, $(filter-out $(MAIN_F), $(SRCS))))
OBJS = $(addprefix $(BUILDDIR)/, $(patsubst %.f90,%.o, $(patsubst %.f,%.o, $(filter-out $(MAIN_F), $(SRCS)))))
.PHONY: clean obj all info
@ -141,6 +141,12 @@ $(BUILDDIR)/%.o: %.f
$(FC) $(FFLAGS) -J $(BUILDDIR) -I $(BUILDDIR) -fPIC -o $@ -c $^ $(OUPUT_REDIRECTION)
$(BUILDDIR)/%.o: %.f90
@echo "Compiling $@..."
mkdir -p $(basename $@)
$(FC) $(FFLAGS) -J $(BUILDDIR) -I $(BUILDDIR) -fPIC -o $@ -c $^ $(OUPUT_REDIRECTION)
$(SO): $(OBJS) $(MAIN_F)
@echo "building Python binding $@..."
mkdir -p $(BUILDDIR)

View File

@ -2,7 +2,7 @@ ase
h5py
ipython
lxml
matplotlib==3.4.3
matplotlib
numpy
Pint
pandas
@ -10,3 +10,5 @@ pycairo
scipy
setuptools-scm
terminaltables
wheel
wxPython

3
src/pyproject.toml Normal file
View File

@ -0,0 +1,3 @@
[build-system]
requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

55
src/setup.cfg Normal file
View File

@ -0,0 +1,55 @@
[metadata]
name = msspec
version = attr: msspec.version.__version__
author = Didier Sébilleau, Sylvain Tricot
author_email = sylvain.tricot@univ-rennes1.fr
url = https://msspec.cnrs.fr
description = A multiple scattering package for sepectroscopies using electrons to probe materials
long_description = MsSpec is a Fortran package to compute the
cross-section of several spectroscopies involving one (or more)
electron(s) as the probe. This package provides a python interface to
control all the steps of the calculation.
Available spectroscopies:
* Photoelectron diffraction
* Auger electron diffraction
* Low energy electron diffraction
* X-Ray absorption spectroscopy
* Auger Photoelectron coincidence spectroscopy
* Computation of the spectral radius""",
keywords = spectroscopy atom electron photon multiple scattering
license = GPL
classifiers =
Development Status :: 3 - Alpha
Environment :: Console
Intended Audience :: Science/Research
License :: OSI Approved :: GNU General Public License (GPL)
Natural Language :: English
Operating System :: Microsoft :: Windows :: Windows 10
Operating System :: POSIX :: Linux
Operating System :: MacOS :: MacOS X
Programming Language :: Fortran
Programming Language :: Python :: 3 :: Only
Topic :: Scientific/Engineering :: Physics
[options]
packages = find:
zip_safe = False
install_requires =
setuptools_scm
ase
h5py
ipython
lxml
matplotlib
numpy
Pint
pandas
pycairo
scipy
terminaltables
[options.package_data]
msspec.phagen = fortran/*.so
msspec.spec = fortran/*.so
msspec = VERSION

BIN
thirdparty/attrdict-2.0.1.tar.gz vendored Normal file

Binary file not shown.