v0.0.2

- added continuous integration using ipr jenkins

work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958]

.gitignore

@@ -7,3 +7,4 @@ test/__pycache__/
 iprbench/resources/__pycache__/
 iprbench/resources/mamul1/__pycache__/
 iprbench/resultsdb/__pycache__/
+build/

ci/ipr.jenkins

@@ -0,0 +1,55 @@
+// Jenkinsfile for jenkins.ipr.univ-rennes1.fr (Institut de Physique de Rennes)
+pipeline {
+    agent {label 'alambix_agent'}
+    environment {
+        IPRBENCH_VENV_PATH = "${WORKSPACE}/iprbench.venv"
+    }
+    stages {
+        stage('setup') {
+            steps {
+                echo 'setting up itinv test environment'
+                sh """#!/bin/bash
+                python3 -m venv ${IPRBENCH_VENV_PATH} &&
+                source ${IPRBENCH_VENV_PATH}/bin/activate &&
+                pip install --upgrade pip &&
+                pip install --upgrade setuptools &&
+                pip install .
+                """
+            }
+        }
+        stage('testing') {
+            steps {
+                sh """#!/bin/bash
+                set -o errexit
+                source ${IPRBENCH_VENV_PATH}/bin/activate &&
+                python -m unittest
+                """
+            }
+        }
+        stage('releasing iprbench...') {
+            steps {
+                // see https://www.jenkins.io/doc/book/pipeline/jenkinsfile/
+                // graffy created the credential 4e327c3e-8b22-462b-8294-199402e22e7c from jenkin's interface in 2020. This credential is named maco-tester, stores a private ssh key that is allowed access to ssh maco@store.ipr.univ-rennes1.fr. This maco-tester credential belongs to global domain and Jenkins store.
+                withCredentials([sshUserPrivateKey(credentialsId: '4e327c3e-8b22-462b-8294-199402e22e7c', keyFileVariable: 'MACO_AT_STORE_KEY_FILE_PATH', passphraseVariable: '', usernameVariable: '')]) {
+                    // MACO_AT_STORE_KEY_FILE_PATH stores the path of the public key file to access maco@store.ipr.univ-rennes1.fr
+                    sh """
+                    git archive -o fr.univ-rennes.ipr.iprbench.tar.gz HEAD &&
+                    scp -i ${MACO_AT_STORE_KEY_FILE_PATH} fr.univ-rennes.ipr.iprbench.tar.gz maco@store.ipr.univ-rennes1.fr:/mnt/store.ipr/InstallProgs/ipr/ipr-packages
+                    """
+                }
+            }
+        }
+    }
+    post
+    {
+        // always, success, failure, unstable, changed
+        failure
+        {
+            mail bcc: '', body: "<b>Example</b><br>Project: ${env.JOB_NAME} <br>Build Number: ${env.BUILD_NUMBER} <br>Build URL: ${env.BUILD_URL}", cc: '', charset: 'UTF-8', from: '', mimeType: 'text/html', replyTo: '', subject: "CI build failed for ${env.JOB_NAME}", to: "guillaume.raffy@univ-rennes1.fr";
+        }
+        cleanup {
+            cleanWs()
+        }
+    }
+}
+

iprbench/main.py

@@ -1,4 +1,4 @@
-__version__ = '0.0.1'
+__version__ = '0.0.2'
 
 from .core import BenchmarkId, IBenchmark, ResultsDbFactory
 from .benchmarks.hibench import HiBench

pyproject.toml

@@ -13,10 +13,10 @@ dependencies = [
     "pandas",
     "matplotlib",
     "sqlalchemy",
-    "cocluto >= 1.6",
-#    "cocluto@git+https://git.ipr.univ-rennes.fr/cellinfo/cocluto"
-    "starbench >= 1.0.1"
-#    "starbench@git+https://github.com/g-raffy/starbench"
+    # "cocluto >= 1.7",
+    "cocluto@git+https://git.ipr.univ-rennes.fr/cellinfo/cocluto@v1.7.0",
+    # "starbench >= 1.0.1"
+    "starbench@git+https://github.com/g-raffy/starbench@v1.0.2",
 ]
 requires-python = ">= 3.8"
 authors = [
@@ -32,7 +32,7 @@ showresults = "iprbench.benchmarks.showresults:main"
 Repository = "https://github.com/g-raffy/starbench"
 
 [tool.setuptools]
-packages = ["iprbench", "iprbench.benchmarks"]
+packages = ["iprbench", "iprbench.benchmarks", "iprbench.resultsdb"]
 
 [tool.setuptools.dynamic]
 version = {attr = "iprbench.main.__version__"}