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refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
# iprbenchmark
reorganized files and documented
2022-06-10 08:39:22 +02:00
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
This example illustrates how `starbench` is used at IPR (Institut de Physique de Rennes) to measure the performance of [hibridon](https://github.com/hibridon/hibridon) on IPR's cluster (`alambix`)
reorganized files and documented
2022-06-10 08:39:22 +02:00
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
usage:
reorganized files and documented
2022-06-10 08:39:22 +02:00
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
```sh
20241007-15:08:10 graffy@graffy-ws2:~/work/starbench/starbench.git$ rsync --exclude .git --exclude starbench.venv --exclude tmp --exclude usecases/ipr/hibench/results -va ./ graffy@alambix.ipr.univ-rennes.fr:/opt/ipr/cluster/work.global/graffy/starbench.git/
sending incremental file list
reorganized files and documented
2022-06-10 08:39:22 +02:00
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
sent 1,416 bytes received 25 bytes 960.67 bytes/sec
total size is 140,225 speedup is 97.31
last command status : [0]
```
## install iprbench
reorganized files and documented
2022-06-10 08:39:22 +02:00
```sh
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
graffy@alambix-frontal:/opt/ipr/cluster/work.local/graffy/bug3372$ python3 -m venv iprbench.venv
graffy@alambix-frontal:/opt/ipr/cluster/work.local/graffy/bug3372$ source ./iprbench.venv/bin/activate
(iprbench.venv) graffy@alambix-frontal:/opt/ipr/cluster/work.local/graffy/bug3372$ pip install ./iprbench.git
Processing ./iprbench.git
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting starbench@ git+https://github.com/g-raffy/starbench
Cloning https://github.com/g-raffy/starbench to /tmp/user/59825/pip-install-uw5i22k1/starbench_890d53070dec47738060b57fdd29b001
Running command git clone --filter=blob:none --quiet https://github.com/g-raffy/starbench /tmp/user/59825/pip-install-uw5i22k1/starbench_890d53070dec47738060b57fdd29b001
Resolved https://github.com/g-raffy/starbench to commit 3ca66d00636ad055506f6b4e2781b498cc7487ac
turned starbench into an installable package work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3878]
2024-06-21 14:48:00 +02:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
Preparing metadata (pyproject.toml) ... done
Collecting pandas
Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
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Collecting matplotlib
Downloading matplotlib-3.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB)
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Collecting sqlalchemy
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Collecting contourpy>=1.0.1
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Collecting cycler>=0.10
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Collecting kiwisolver>=1.3.1
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Collecting numpy>=1.23
Downloading numpy-2.1.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.3 MB)
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Collecting packaging>=20.0
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Collecting pillow>=8
Downloading pillow-10.4.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB)
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Collecting python-dateutil>=2.7
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Collecting pytz>=2020.1
Downloading pytz-2024.2-py2.py3-none-any.whl (508 kB)
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Collecting tzdata>=2022.7
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Collecting typing-extensions>=4.6.0
Downloading typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Collecting greenlet!=0.4.17
Downloading greenlet-3.1.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (602 kB)
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Collecting six>=1.5
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Building wheels for collected packages: iprbench, starbench
Building wheel for iprbench (pyproject.toml) ... done
Created wheel for iprbench: filename=iprbench-0.0.1-py3-none-any.whl size=19188 sha256=0ece4a9b1b44434c0f033a253aae301a5d53039955f1f6b182c0b833d44c3e93
Stored in directory: /tmp/user/59825/pip-ephem-wheel-cache-8yw7rwk6/wheels/84/c9/82/e72d13fb7df12a8004ca6383b185a00f9ab3ddd8695e9e6cd8
Building wheel for starbench (pyproject.toml) ... done
Created wheel for starbench: filename=starbench-1.0.0-py3-none-any.whl size=9612 sha256=18968f356bb3d6f6c2337b4bbaf709510c50a6a9902c3363f4b568c409846ac0
Stored in directory: /tmp/user/59825/pip-ephem-wheel-cache-8yw7rwk6/wheels/cf/73/d3/14e4830d3e06c2c3ab71fdf68e0f14b50132ec23eaa6b2aa65
Successfully built iprbench starbench
Installing collected packages: pytz, tzdata, typing-extensions, starbench, six, pyparsing, pillow, packaging, numpy, kiwisolver, greenlet, fonttools, cycler, sqlalchemy, python-dateutil, contourpy, pandas, matplotlib, iprbench
Successfully installed contourpy-1.3.0 cycler-0.12.1 fonttools-4.54.1 greenlet-3.1.1 iprbench-0.0.1 kiwisolver-1.4.7 matplotlib-3.9.2 numpy-2.1.2 packaging-24.1 pandas-2.2.3 pillow-10.4.0 pyparsing-3.1.4 python-dateutil-2.9.0.post0 pytz-2024.2 six-1.16.0 sqlalchemy-2.0.35 starbench-1.0.0 typing-extensions-4.12.2 tzdata-2024.2
reorganized files and documented
2022-06-10 08:39:22 +02:00
```
added a complete standalone usage example (mamul1: mutiplication of matrices) in the form of a unit test note: [matmul] is a copy of [https://github.com/g-raffy/flobe/tree/main/benchmarks/mamul1]
2024-06-30 15:53:03 +02:00
refactored iprbench to separate ipr benchmark framework from the actual benchmarks This decoupling allows to write benchmarks as modules that can be used in various situations (from a benchmark job or directly from a user), but this design will allow automatic registering of the benchmark results in a user selectable form (sql database, stdout, etc.) - separated `hibenchonphysix.py` into `clusterbench.py` (tool to run a benchmark on a cluster) and `hibench.py` (hibridon benchmark module) so that `clusterbench.py` no longer has a knowledge about hibridon. - there are currently 2 ways to run a bechmark: 1. as a simple run through `clusterbench-run` command (which will eventually be renamed as iprbench-run since it might be completely independent from the concept of cluster) 2. as cluster jobs through `clusterbench-submit` command - added unit test - added another benchmark `mamul1` that is used as a unittest because it has 2 benefits over `hibench` benchmark: 1. it's standalone (no external resources needed) 2. it's quicker to execute note: this refactoring work is not complete yet, but the concept proof is complete (the 2 unittests pass): - still need to provide the user a way to switch between IpRCluster and DummyCluster(which is only intended to only be used for testing clusterbench)) - still need to run multiple configs of the same benchmark in one run (as hibenchonphysix did) work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-22 09:16:41 +02:00
## run unit tests
```sh
20241018-16:56:05 graffy@graffy-ws2:~/work/starbench/iprbench.git$ python3 -m unittest test.test_iprbench
2024-10-18 16:57:42,589 - INFO - test_iprbench_run
creating build directory /tmp/mamul1_out/output/worker<worker_id>
executing the following command in parallel (2 parallel runs) : '['mkdir', '-p', '/tmp/mamul1_out/output/worker<worker_id>/build']'
mean duration : 0.004 s (2 runs)
configuring /home/graffy/work/starbench/iprbench.git/test/mamul1 into /tmp/mamul1_out/output/worker<worker_id>/build ...
executing the following command in parallel (2 parallel runs) : '['/usr/bin/cmake', '-DCMAKE_BUILD_TYPE=Release', '-DCMAKE_Fortran_COMPILER=gfortran', '/home/graffy/work/starbench/iprbench.git/test/mamul1']'
mean duration : 0.098 s (2 runs)
building /tmp/mamul1_out/output/worker<worker_id>/build ...
executing the following command in parallel (2 parallel runs) : '['make']'
mean duration : 0.073 s (2 runs)
benchmarking /tmp/mamul1_out/output/worker<worker_id>/build ...
executing the following command in parallel (2 parallel runs) : '['./mamul1', '1024', '10']'
mean duration : 0.660 s (2 runs)
duration : 0.660 s
.
----------------------------------------------------------------------
Ran 1 test in 1.035s
OK
last command status : [0]
```
```sh
20241018-16:56:05 graffy@graffy-ws2:~/work/starbench/iprbench.git$ python3 -m unittest test.test_clusterbench
```
## launch a benchmark on the current system
```sh
iprbench-run --benchmark-id 'mamul1' --config '{"compiler_id": "gfortran", "matrix_size": 1024, "num_loops":10, "num_cores":2}' --results-dir /tmp/mamul1_out
```
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
## launch benchmark jobs on alambix cluster
added a complete standalone usage example (mamul1: mutiplication of matrices) in the form of a unit test note: [matmul] is a copy of [https://github.com/g-raffy/flobe/tree/main/benchmarks/mamul1]
2024-06-30 15:53:03 +02:00
```sh
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
(iprbench.venv) graffy@alambix-frontal:/opt/ipr/cluster/work.local/graffy/bug3372$ hibenchonphysix --commit-id 53894da48505892bfa05693a52312bacb12c70c9 --results-dir $GLOBAL_WORK_DIR/graffy/hibridon/benchmarks/starbench/hibench/$(date --iso=seconds) --arch-regexp 'intel_xeon_x5650' --cmake-path /usr/bin/cmake
INFO:root:available host groups: dict_keys(['intel_xeon_x5550', 'intel_xeon_x5650', 'intel_xeon_e5-2660', 'intel_xeon_e5-2660v2', 'intel_xeon_e5-2660v4', 'intel_xeon_gold_6140', 'intel_xeon_gold_6154', 'intel_xeon_gold_5220', 'intel_xeon_gold_6226r', 'intel_xeon_gold_6248r', 'intel_xeon_gold_6348', 'amd_epyc_7282', 'amd_epyc_7452'])
INFO:root:requested host groups: ['intel_xeon_x5650']
INFO:root:using test arch4_quick for benchmarking
INFO:root:creating /opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00/iprbench.venv.tgz (the virtual environment that will be used in this bench by all its jobs at some point)
Collecting virtualenv-clone
Using cached virtualenv_clone-0.5.7-py3-none-any.whl (6.6 kB)
Installing collected packages: virtualenv-clone
Successfully installed virtualenv-clone-0.5.7
DEBUG:root:command = /opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00/53894da48505892bfa05693a52312bacb12c70c9/arch4_quick/intel_xeon_x5650/gfortran/starbench.job "https://github.com/hibridon/hibridon" "g-raffy" "/mnt/home.ipr/graffy/.github/personal_access_tokens/bench.hibridon.cluster.ipr.univ-rennes1.fr.pat" "53894da48505892bfa05693a52312bacb12c70c9" "-DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=ON -DCMAKE_Fortran_COMPILER=gfortran" "ctest --output-on-failure -L ^arch4_quick$" "" "/usr/bin/cmake"
DEBUG:root:qsub_command = qsub -pe smp 12 -l "hostname=alambix50.ipr.univ-rennes.fr" -S /bin/bash -cwd -m ae -l mem_available=1G -j y -N hibench_intel_xeon_x5650_gfortran_53894da48505892bfa05693a52312bacb12c70c9 /opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00/53894da48505892bfa05693a52312bacb12c70c9/arch4_quick/intel_xeon_x5650/gfortran/starbench.job "https://github.com/hibridon/hibridon" "g-raffy" "/mnt/home.ipr/graffy/.github/personal_access_tokens/bench.hibridon.cluster.ipr.univ-rennes1.fr.pat" "53894da48505892bfa05693a52312bacb12c70c9" "-DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=ON -DCMAKE_Fortran_COMPILER=gfortran" "ctest --output-on-failure -L ^arch4_quick$" "" "/usr/bin/cmake"
Your job 17357 ("hibench_intel_xeon_x5650_gfortran_53894da48505892bfa05693a52312bacb12c70c9") has been submitted
INFO:root:using test arch4_quick for benchmarking
INFO:root:skipping the creation of /opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00/iprbench.venv.tgz because it already exists (probably created for other jobs of the same bench)
DEBUG:root:command = /opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00/53894da48505892bfa05693a52312bacb12c70c9/arch4_quick/intel_xeon_x5650/ifort/starbench.job "https://github.com/hibridon/hibridon" "g-raffy" "/mnt/home.ipr/graffy/.github/personal_access_tokens/bench.hibridon.cluster.ipr.univ-rennes1.fr.pat" "53894da48505892bfa05693a52312bacb12c70c9" "-DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=ON -DCMAKE_Fortran_COMPILER=ifort -DBLA_VENDOR=Intel10_64lp" "ctest --output-on-failure -L ^arch4_quick$" "module load compilers/ifort/latest" "/usr/bin/cmake"
DEBUG:root:qsub_command = qsub -pe smp 12 -l "hostname=alambix50.ipr.univ-rennes.fr" -S /bin/bash -cwd -m ae -l mem_available=1G -j y -N hibench_intel_xeon_x5650_ifort_53894da48505892bfa05693a52312bacb12c70c9 /opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00/53894da48505892bfa05693a52312bacb12c70c9/arch4_quick/intel_xeon_x5650/ifort/starbench.job "https://github.com/hibridon/hibridon" "g-raffy" "/mnt/home.ipr/graffy/.github/personal_access_tokens/bench.hibridon.cluster.ipr.univ-rennes1.fr.pat" "53894da48505892bfa05693a52312bacb12c70c9" "-DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=ON -DCMAKE_Fortran_COMPILER=ifort -DBLA_VENDOR=Intel10_64lp" "ctest --output-on-failure -L ^arch4_quick$" "module load compilers/ifort/latest" "/usr/bin/cmake"
Your job 17358 ("hibench_intel_xeon_x5650_ifort_53894da48505892bfa05693a52312bacb12c70c9") has been submitted
added a complete standalone usage example (mamul1: mutiplication of matrices) in the form of a unit test note: [matmul] is a copy of [https://github.com/g-raffy/flobe/tree/main/benchmarks/mamul1]
2024-06-30 15:53:03 +02:00
```
refactored all iprbench code found in `usecases/ipr/hibench` into a `iprbench` python package The main motivation for this is to allow the code executed by jobs to benefit from multiple packages (eg iprbench, [stargemm](https://github.com/g-raffy/starbench), cocluto) to perform common missing tasks such as registering the results output in the iprbench database. work related to [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3958] and [https://bugzilla.ipr.univ-rennes.fr/show_bug.cgi?id=3372]
2024-10-10 18:06:09 +02:00
`hibenchonphysix` script launches two `sge` jobs for each machine type in `alambix` cluster:
- one job that performs a benchmark of hibridon with `gfortran` compiler
- one job that performs a benchmark of hibridon with `ifort` compiler
When the job successfully completes, it puts the results of the benchmark on `alambix`'s global work directory (eg `/opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00/53894da48505892bfa05693a52312bacb12c70c9/arch4_quick/intel_xeon_x5650/gfortran`)
## graph the results of benchmarks
`showresults` is a command line tool that graphs the results after they've been downloaded from the results directory (for example `/opt/ipr/cluster/work.global/graffy/hibridon/benchmarks/starbench/hibench/2024-10-10T12:11:44+02:00`) to the hardcoded (at the moment) path `/home/graffy/work/starbench/starbench.git/usecases/ipr/hibench/results`
```sh
20241010-16:30:54 graffy@graffy-ws2:~/work/starbench/iprbench.git$ showresults
```