39 lines
2.5 KiB
Plaintext
39 lines
2.5 KiB
Plaintext
Traceback (most recent call last):
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/jupyter_core/utils/__init__.py", line 154, in wrapped
|
|
asyncio.get_running_loop()
|
|
RuntimeError: no running event loop
|
|
|
|
During handling of the above exception, another exception occurred:
|
|
|
|
Traceback (most recent call last):
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/jupyter_cache/executors/utils.py", line 58, in single_nb_execution
|
|
executenb(
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/nbclient/client.py", line 1319, in execute
|
|
return NotebookClient(nb=nb, resources=resources, km=km, **kwargs).execute()
|
|
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/jupyter_core/utils/__init__.py", line 158, in wrapped
|
|
return loop.run_until_complete(inner)
|
|
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
|
File "/home/stricot/.pyenv/versions/3.11.13/lib/python3.11/asyncio/base_events.py", line 654, in run_until_complete
|
|
return future.result()
|
|
^^^^^^^^^^^^^^^
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/nbclient/client.py", line 709, in async_execute
|
|
await self.async_execute_cell(
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/nbclient/client.py", line 1005, in async_execute_cell
|
|
exec_reply = await self.task_poll_for_reply
|
|
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/nbclient/client.py", line 806, in _async_poll_for_reply
|
|
error_on_timeout_execute_reply = await self._async_handle_timeout(timeout, cell)
|
|
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
|
File "/home/stricot/msspec_py3.11.13/lib/python3.11/site-packages/nbclient/client.py", line 856, in _async_handle_timeout
|
|
raise CellTimeoutError.error_from_timeout_and_cell(
|
|
nbclient.exceptions.CellTimeoutError: A cell timed out while it was being executed, after 30 seconds.
|
|
The message was: Cell execution timed out.
|
|
Here is a preview of the cell contents:
|
|
-------------------
|
|
["calc = MSSPEC(spectroscopy='PED', algorithm='inversion', txt='msspec.log')", 'calc.set_atoms(cluster)', '', 'calc.source_parameters.theta = 0', 'calc.source_parameters.phi = 0']
|
|
...
|
|
['dset.add_columns(experiment=y)', '', '# Add points to view', 'view = dset.views[0]', "view.select('phi', 'experiment', legend='Exp. data')"]
|
|
-------------------
|
|
|