diff --git a/msspecbook/Activity07/Activity07.ipynb b/msspecbook/Activity07/Activity07.ipynb index df1991e..a0f1264 100644 --- a/msspecbook/Activity07/Activity07.ipynb +++ b/msspecbook/Activity07/Activity07.ipynb @@ -10,12 +10,22 @@ ] }, { - "cell_type": "code", - "execution_count": null, - "id": "e0df9191-52b9-4a42-9232-7fed2b63cc3a", - "metadata": {}, - "outputs": [], - "source": [] + "cell_type": "markdown", + "id": "2f802e59-3ebc-4c5d-a034-42a706044d87", + "metadata": { + "editable": true, + "slideshow": { + "slide_type": "" + }, + "tags": [] + }, + "source": [ + ":::{figure-md} filters-fig\n", + "\"path\n", + "\n", + "Some examples of scattering paths with `forward_scattering`, `backward_scattering` and `distance` filters selected. The accepted forward angle is 45°, the accepted backscattering angle is 20° and the threshold distance is $6a_0$ where $a_0$ is the lattice parameter. Note that the yellow path is rejected but if the `off_cone_events` option is set to a value > 1, then it could have been accepted.\n", + ":::" + ] } ], "metadata": { diff --git a/msspecbook/Activity07/filters.jpg b/msspecbook/Activity07/filters.jpg new file mode 100644 index 0000000..bfd1997 Binary files /dev/null and b/msspecbook/Activity07/filters.jpg differ diff --git a/msspecbook/_build/.doctrees/Activity07/Activity07.doctree b/msspecbook/_build/.doctrees/Activity07/Activity07.doctree index d3c4616..19e64b2 100644 Binary files a/msspecbook/_build/.doctrees/Activity07/Activity07.doctree and b/msspecbook/_build/.doctrees/Activity07/Activity07.doctree differ diff --git a/msspecbook/_build/.doctrees/environment.pickle b/msspecbook/_build/.doctrees/environment.pickle index d186678..bf0a36a 100644 Binary files a/msspecbook/_build/.doctrees/environment.pickle and b/msspecbook/_build/.doctrees/environment.pickle differ diff --git a/msspecbook/_build/html/Activity07/Activity07.html b/msspecbook/_build/html/Activity07/Activity07.html index 8b66f99..c8aca89 100644 --- a/msspecbook/_build/html/Activity07/Activity07.html +++ b/msspecbook/_build/html/Activity07/Activity07.html @@ -32,7 +32,7 @@ - + @@ -57,6 +57,8 @@ + + @@ -344,6 +346,13 @@ document.write(`

Activity 7: Large clusters and path filtering#

+
+path filtering + +
+

Fig. 16 Some examples of scattering paths with forward_scattering, backward_scattering and distance filters selected. The accepted forward angle is 45°, the accepted backscattering angle is 20° and the threshold distance is \(6a_0\) where \(a_0\) is the lattice parameter. Note that the yellow path is rejected but if the off_cone_events option is set to a value > 1, then it could have been accepted.#

+
+