# lipase

An image processing software suite for the project lipase (Véronique Vié, Institut de Physique de Rennes)

This software suite is developed as a python script for fiji (an image processing package based on imageJ).

## What it does

As the development is at its early stages, it does not much at the moment:

- loads a sequence of images into fiji in the form of an hyperstack (5d images : width, height, depth, channels, time)

## How to use

1. make sure that fiji is installed on your computer. If not, get it from https://fiji.sc/
2. make sure that fiji has the IJ-OpenCV-plugins
    - in Fiji, select the Help->Update... menu item
    - in the Manage update sites window, tick the IJ-OpenCV-plugins (URL = http://sites.imagej.net/IJ-OpenCV/) if it's not ticked.
    - click the close button of the Manage update sites window
    - click "Apply changes" button in the ImageJ Updater window
    - wait until the plugins are installed and quit Fiji
3. Install lipase
    - lipase is released as a package named "lipase-<lipase-version>.zip". This package can be build from sources using the 'make package' command, provided you have all the build tools on your machine (make, javac, zip).
    - simply unzip the package "lipase-<lipase-version>.zip" in Fiji root directory
4. launch fiji and check that you have lipase tools in the menu Plugins/Ipr/Lipase

## Notes

http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:microscope_image_correlation_spectroscopy:start