RAW_IMAGES_ROOT_PATH:=$(shell echo ~/work/lipase/raw-images)


# pdflatex is called twice to ensure cross references are found
lipase.pdf: lipase.tex graphics
	pdflatex lipase.tex; pdflatex lipase.tex

# command used to convert traps sequences in the visible into png with maximum contrast
TRAPS_VISIBLE_CONVERTER=convert -contrast-stretch 2%x1% -resize 25%

GENERATED_GRAPHICS=\
	graphics/res_soleil2018_GGH_GGH_2018_cin2_phiG_I_327_vis_-40_1_Pos0_img_000000000_DM300_nofilter_vis_000.png \
	graphics/res_soleil2018_GGH_GGH_2018_cin2_phiG_I_327_vis_-40_1_Pos0_img_000000019_DM300_nofilter_vis_000.png \
	graphics/res_soleil2018_GGH_GGH_2018_cin2_phiG_I_327_vis_-40_1_Pos0_img_000000039_DM300_nofilter_vis_000.png

.PHONY: graphics
graphics: $(GENERATED_GRAPHICS)

graphics/res_soleil2018_GGH_GGH_2018_cin2_phiG_I_327_vis_-40_1_Pos0_img_000000000_DM300_nofilter_vis_000.png : $(RAW_IMAGES_ROOT_PATH)/res_soleil2018/GGH/GGH_2018_cin2_phiG_I_327_vis_-40_1/Pos0/img_000000000_DM300_nofilter_vis_000.tif
	$(TRAPS_VISIBLE_CONVERTER) "$<" "$@"

graphics/res_soleil2018_GGH_GGH_2018_cin2_phiG_I_327_vis_-40_1_Pos0_img_000000019_DM300_nofilter_vis_000.png : $(RAW_IMAGES_ROOT_PATH)/res_soleil2018/GGH/GGH_2018_cin2_phiG_I_327_vis_-40_1/Pos0/img_000000019_DM300_nofilter_vis_000.tif
	$(TRAPS_VISIBLE_CONVERTER) "$<" "$@"


graphics/res_soleil2018_GGH_GGH_2018_cin2_phiG_I_327_vis_-40_1_Pos0_img_000000039_DM300_nofilter_vis_000.png : $(RAW_IMAGES_ROOT_PATH)/res_soleil2018/GGH/GGH_2018_cin2_phiG_I_327_vis_-40_1/Pos0/img_000000039_DM300_nofilter_vis_000.tif
	$(TRAPS_VISIBLE_CONVERTER) "$<" "$@"

.PHONY: clean
clean:
	rm -f $(GENERATED_GRAPHICS)
	rm -f lipase.pdf lipase.aux lipase.fls lipase.log lipase.fdb_latexmk lipase.dvi;