55 lines
1.9 KiB
Docker
55 lines
1.9 KiB
Docker
# Get the base Python image
|
|
FROM alpine:edge
|
|
LABEL maintainer="guillaume.raffy@univ-rennes.fr"
|
|
# Variables
|
|
ARG installdir=/opt/grassloper user=grassloper
|
|
# Install system dependencies
|
|
RUN apk add --no-cache -X http://dl-cdn.alpinelinux.org/alpine/edge/community \
|
|
# hdf5-hl cairo openblas lapack libxml2 libxslt libzlf wxwidgets-gtk3 openjpeg libimagequant \
|
|
nano \
|
|
# hdf5-dev \
|
|
py3-virtualenv \
|
|
bash \
|
|
git \
|
|
python3 \
|
|
py3-pip \
|
|
py3-h5py \
|
|
py3-matplotlib \
|
|
py3-numpy \
|
|
py3-opencv \
|
|
py3-scipy
|
|
# py3-setuptools_scm \
|
|
# py3-terminaltables
|
|
|
|
# disabled install of py3-h5py /usr/lib/python3.11/site-packages/h5py/__init__.py:36: UserWarning: h5py is running against HDF5 1.14.3 when it was built against 1.14.2, this may cause problems
|
|
# _warn(("h5py is running against HDF5 {0} when it was built against {1}, "
|
|
|
|
# Add a non-privileged user
|
|
RUN adduser -D -s /bin/bash ${user}
|
|
|
|
# Set the working directory in the container
|
|
WORKDIR ${installdir}
|
|
# Install grassloper
|
|
RUN git clone https://git.ipr.univ-rennes.fr/graffy/grassloper ./grassloper.git
|
|
# remove opencv-python from grassloper's dependencies because it causes pip to unnecessarily attempt to install it (and it would fail because some building tools are missing) even if it's already installed on the system (god know why)
|
|
RUN sed -i "s/, 'opencv-python'//" ./grassloper.git/setup.py
|
|
# COPY . ./grassloper.git
|
|
RUN git clone https://github.com/g-raffy/improtools ./improtools.git
|
|
# COPY improtools.git ./improtools.git
|
|
|
|
RUN virtualenv --system-site-packages ${installdir}/grassloper.venv
|
|
RUN . ${installdir}/grassloper.venv/bin/activate && \
|
|
pip list && \
|
|
pip install ./improtools.git
|
|
RUN . ${installdir}/grassloper.venv/bin/activate && \
|
|
pip list && \
|
|
pip install ./grassloper.git
|
|
RUN . ${installdir}/grassloper.venv/bin/activate && \
|
|
pip cache purge
|
|
|
|
USER ${user}
|
|
ENV PATH=${installdir}/grassloper.venv/bin:$PATH
|
|
# Run the grassloper command on startup
|
|
ENTRYPOINT ["grassloper"]
|
|
|