Sylvain Tricot
50219b9f45
epsi-builds/msspec_python3/pipeline/head This commit looks good
Details
Just began to rewrite the topmost Makefile which will provide targets for: * runing the tests * creating the Python venv * building and installing the code * building the manual and the website Makefiles in subfolder were also upgraded to fix some issues in target filenames. |
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| src | ||
| tests/sprkkr | ||
| utils | ||
| .gitattributes | ||
| .gitignore | ||
| Jenkinsfile | ||
| Makefile | ||
| README.md | ||
| license.txt | ||
README.md
Introduction
This is the Python MsSpec version with support for Python 3.x and dynamic memory allocation for Phagen and Spec
To work with the git repository
You can clone this repository onto your local computer using git
git clone https://git.ipr.univ-rennes1.fr/epsi/msspec_python3.git
This will create a folder named "msspec_python3" with all the source code inside.
You can also clone the development branch:
git clone --branch devel https://git.ipr.univ-rennes1.fr/epsi/msspec_python3.git
It is higly recommended to work in a Python virtual environment. To create one, you can use:
virtualenv --python=python3 msspec_venv
or
virtualenv --python=python3 --system-site-packages msspec_venv
to activate the virtual environment (if you are in the folder where you created "msspec_venv"):
source ./msspec_venv/bin/activate
Now you can build the program, go in the source folder
cd msspec_python3/src
Install the python package dependencies.
pip install -r setup_requirements.txt
pip install -r requirements.txt
You need to compile the fortran libs. This is done by the scons (Software Construction) program
scons
Finally, install the package in develop mode:
pip install -e .
That's all. All you need to do each time you want to work with msspec is activating the virtual environment