msspec_python3/doc/source/tutorials/copper/log.log

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INFO:msspec:Getting the TMatrix...
_________________________________________________________________
PHAGEN
_________________________________________________________________
parameters for this xpd calculation:
-----------------------------------------------------------------
edge= k
potype= hedin norman= stdcrm absorber= 1
coor= angs emin= 13.52 Ry emax= 13.52 Ry
delta= 0.300 Ry gamma= 0.03 Ry eftri= 0.000 Ry
ionization state : neutral
final state potential generated internally
Computes the T-matrix and radial matrix elements
coordinates in angstroms Radii
-----------------------------------------------------------------
Cu 29 0.0000 0.0000 -3.6000 0.0000 0.0000
Cu 29 -1.8000 -1.8000 0.0000 0.0000 0.0000
Cu 29 -1.8000 0.0000 -1.8000 0.0000 0.0000
Cu 29 -3.6000 0.0000 0.0000 0.0000 0.0000
Cu 29 -1.8000 1.8000 0.0000 0.0000 0.0000
Cu 29 0.0000 -1.8000 -1.8000 0.0000 0.0000
Cu 29 0.0000 -3.6000 0.0000 0.0000 0.0000
Cu 29 1.8000 -1.8000 0.0000 0.0000 0.0000
Cu 29 0.0000 1.8000 -1.8000 0.0000 0.0000
Cu 29 1.8000 0.0000 -1.8000 0.0000 0.0000
Cu 29 0.0000 0.0000 0.0000 0.0000 0.0000
Cu 29 1.8000 1.8000 0.0000 0.0000 0.0000
Cu 29 0.0000 3.6000 0.0000 0.0000 0.0000
Cu 29 3.6000 0.0000 0.0000 0.0000 0.0000
-----------------------------------------------------------------
** enter calphas **
---
total energy for atom in ground state
total energy for atom with a hole in k edge
calculated ionization energy for edge k = 8994.86914 eV
---
calculated ionization potential (ryd) = 661.387451
---
symmetrizing coordinates...
symmetrized atomic coordinates of cluster
position
atom no. x y z eq
1 osph 0 0.0000 0.0000 0.0000 0
2 Cu 29 0.0000 0.0000 -5.3452 0
3 Cu 29 -3.4015 -3.4015 1.4578 0
4 Cu 29 -3.4015 0.0000 -1.9437 0
5 Cu 29 -6.8030 0.0000 1.4578 0
6 Cu 29 0.0000 0.0000 1.4578 0
7 Cu 29 -3.4015 3.4015 1.4578 3
8 Cu 29 3.4015 -3.4015 1.4578 3
9 Cu 29 3.4015 3.4015 1.4578 3
10 Cu 29 0.0000 -3.4015 -1.9437 4
11 Cu 29 0.0000 3.4015 -1.9437 4
12 Cu 29 3.4015 0.0000 -1.9437 4
13 Cu 29 0.0000 -6.8030 1.4578 5
14 Cu 29 0.0000 6.8030 1.4578 5
15 Cu 29 6.8030 0.0000 1.4578 5
computing muffin tin potential and phase shifts
generating core state wavefunction
generating final potential (complex hedin-lundqvist exchange)
MT radii for Hydrogen atoms determined by stdcrm unless other options are specified
-----------------------------------------------------------------
i rs(i) i=1,natoms
1 9.28 2 2.50 3 2.46 4 2.35 5 2.48 6 2.33 7 2.46 8 2.46
9 2.46 10 2.35 11 2.35 12 2.35 13 2.48 14 2.48 15 2.48
N.B.: Order of atoms as reshuffled by symmetry routines
-----------------------------------------------------------------
input value for coulomb interst. potential = -0.699999988
and interstitial rs = 3.00000000
lower bound for coulomb interst. potential = -0.290025890
and for interst. rs = 2.54297900
lmax assignment based on l_max = r_mt * k_e + 2
where e is the running energy
optimal lmax chosen according to the running energy e for each atom
number of centers= 14
starting potentials and/or charge densities written to file 13
symmetry information generated internally
symmetry information written to file 14
core initial state of type: 1s1/2
fermi level = -0.17690
generating t_l (for030) and atomic cross section (for050)
gamma = 0.030000 rsint = 3.944844
check in subroutine cont
order of neighb. -- symb. -- dist. from absorber
3 Cu 4.81045771
5 Cu 6.80301476
2 Cu 8.33195782
4 Cu 9.62091541
-----------------------------------------------------------------
1 Cu 0.000000
3 Cu 4.810458
5 Cu 6.803015
2 Cu 8.331958
4 Cu 9.620915
1 Cu 0.000000
3 Cu 4.810458
5 Cu 6.803015
2 Cu 8.331958
4 Cu 9.620915
irho = 2 entering vxc to calculate energy dependent exchange
energy dependent vcon = (-0.181322575,0.183172509) at energy 13.5235996
calculating atomic t-matrix elements atm(n)
check orthogonality between core and continuum state
scalar product between core and continuum state = (0.215178907,-7.336383685E-03)
sqrt(xe/pi) = (1.08555424,-3.627028549E-03)
check ionization potential: 661.387451
value of the mean free path:
-----------------------------------------------------------------
average mean free path due to finite gamma: mfp = 8.81667 angstrom at energy 13.52360
average mean free path in the cluster : mfp = 8.71420 angstrom at energy 13.52360
total mean free path due to Im V and gamma: mfp = 4.38257 angstrom at energy 13.52360
-----------------------------------------------------------------
** phagen terminated normally **
INFO:msspec:Getting the TMatrix...
_________________________________________________________________
PHAGEN
_________________________________________________________________
parameters for this xpd calculation:
-----------------------------------------------------------------
edge= k
potype= hedin norman= stdcrm absorber= 1
coor= angs emin= 13.52 Ry emax= 13.52 Ry
delta= 0.300 Ry gamma= 0.03 Ry eftri= 0.000 Ry
ionization state : neutral
final state potential generated internally
Computes the T-matrix and radial matrix elements
coordinates in angstroms Radii
-----------------------------------------------------------------
Cu 29 0.0000 0.0000 -3.8000 0.0000 0.0000
Cu 29 -1.9000 -1.9000 0.0000 0.0000 0.0000
Cu 29 -1.9000 0.0000 -1.9000 0.0000 0.0000
Cu 29 -3.8000 0.0000 0.0000 0.0000 0.0000
Cu 29 -1.9000 1.9000 0.0000 0.0000 0.0000
Cu 29 0.0000 -1.9000 -1.9000 0.0000 0.0000
Cu 29 0.0000 -3.8000 0.0000 0.0000 0.0000
Cu 29 1.9000 -1.9000 0.0000 0.0000 0.0000
Cu 29 0.0000 1.9000 -1.9000 0.0000 0.0000
Cu 29 1.9000 0.0000 -1.9000 0.0000 0.0000
Cu 29 0.0000 0.0000 0.0000 0.0000 0.0000
Cu 29 1.9000 1.9000 0.0000 0.0000 0.0000
Cu 29 0.0000 3.8000 0.0000 0.0000 0.0000
Cu 29 3.8000 0.0000 0.0000 0.0000 0.0000
-----------------------------------------------------------------
** enter calphas **
---
total energy for atom in ground state
total energy for atom with a hole in k edge
calculated ionization energy for edge k = 8994.86914 eV
---
calculated ionization potential (ryd) = 661.387451
---
symmetrizing coordinates...
symmetrized atomic coordinates of cluster
position
atom no. x y z eq
1 osph 0 0.0000 0.0000 0.0000 0
2 Cu 29 0.0000 0.0000 -5.6422 0
3 Cu 29 -3.5905 -3.5905 1.5388 0
4 Cu 29 -3.5905 0.0000 -2.0517 0
5 Cu 29 -7.1810 0.0000 1.5388 0
6 Cu 29 0.0000 0.0000 1.5388 0
7 Cu 29 -3.5905 3.5905 1.5388 3
8 Cu 29 3.5905 -3.5905 1.5388 3
9 Cu 29 3.5905 3.5905 1.5388 3
10 Cu 29 0.0000 -3.5905 -2.0517 4
11 Cu 29 0.0000 3.5905 -2.0517 4
12 Cu 29 3.5905 0.0000 -2.0517 4
13 Cu 29 0.0000 -7.1810 1.5388 5
14 Cu 29 0.0000 7.1810 1.5388 5
15 Cu 29 7.1810 0.0000 1.5388 5
computing muffin tin potential and phase shifts
generating core state wavefunction
generating final potential (complex hedin-lundqvist exchange)
MT radii for Hydrogen atoms determined by stdcrm unless other options are specified
-----------------------------------------------------------------
i rs(i) i=1,natoms
1 9.80 2 2.64 3 2.60 4 2.44 5 2.61 6 2.46 7 2.60 8 2.60
9 2.60 10 2.44 11 2.44 12 2.44 13 2.61 14 2.61 15 2.61
N.B.: Order of atoms as reshuffled by symmetry routines
-----------------------------------------------------------------
input value for coulomb interst. potential = -0.699999988
and interstitial rs = 3.00000000
lower bound for coulomb interst. potential = -0.232031077
and for interst. rs = 2.76609278
lmax assignment based on l_max = r_mt * k_e + 2
where e is the running energy
optimal lmax chosen according to the running energy e for each atom
number of centers= 14
starting potentials and/or charge densities written to file 13
symmetry information generated internally
symmetry information written to file 14
core initial state of type: 1s1/2
fermi level = -0.16924
generating t_l (for030) and atomic cross section (for050)
gamma = 0.030000 rsint = 4.292365
check in subroutine cont
order of neighb. -- symb. -- dist. from absorber
3 Cu 5.07770586
5 Cu 7.18096018
2 Cu 8.79484367
4 Cu 10.1554117
-----------------------------------------------------------------
1 Cu 0.000000
3 Cu 5.077706
5 Cu 7.180960
2 Cu 8.794844
4 Cu 10.155412
1 Cu 0.000000
3 Cu 5.077706
5 Cu 7.180960
2 Cu 8.794844
4 Cu 10.155412
irho = 2 entering vxc to calculate energy dependent exchange
energy dependent vcon = (-0.151319593,0.168841615) at energy 13.5235996
calculating atomic t-matrix elements atm(n)
check orthogonality between core and continuum state
scalar product between core and continuum state = (0.217915282,-9.193832986E-03)
sqrt(xe/pi) = (1.08495688,-3.348779166E-03)
check ionization potential: 661.387451
value of the mean free path:
-----------------------------------------------------------------
average mean free path due to finite gamma: mfp = 8.81667 angstrom at energy 13.52360
average mean free path in the cluster : mfp = 9.13179 angstrom at energy 13.52360
total mean free path due to Im V and gamma: mfp = 4.48573 angstrom at energy 13.52360
-----------------------------------------------------------------
** phagen terminated normally **