Update doc and README info.

README.md

@@ -8,6 +8,14 @@ This is the Python MsSpec version with support for Python 3.x and dynamic memory
 To work with the git repository
 ===============================
 
+You can clone this repository onto your local computer using git
+
+```Bash
+git clone https://git.ipr.univ-rennes1.fr/epsi/msspec_python3.git
+```
+
+This will create a folder named "msspec_python3" with all the source code inside.
+
 It is higly recommended to work in a Python virtual environment.
 To create one, you can use:
 
@@ -28,84 +36,29 @@ to activate the virtual environment (if you are in the folder where you created
 source ./msspec_venv/bin/activate
 ```
 
-To get the python package dependencies, you can install the requirements with the provided requirements.txt file.
+Now you can build the program, go in the source folder
 
 ```Bash
-pip install --upgrade -r requirements.txt
+cd msspec_python3/src
 ```
 
-You also need to export the path to the msspec package in the PYTHONPATH variable (replace the whereisthegitrepo part
+Install the python package dependencies.
-of the string with the actual absolute path of your repo.
 
 ```Bash
-export PYTHONPATH=/whereisthegitrepo/src:$PYTHONPATH
+pip install -r setup_requirements.txt
+pip install -r requirements.txt
 ```
 
-Finally you need to compile the fortran libs:
+You need to compile the fortran libs. This is done by the scons (Software Construction) program
 
 ```Bash
-make pybinding
+scons
 ```
 
-That's all. All you need to do each time you want to work with msspec is:
+Finally, install the package in develop mode:
-
-- To activate the virtual environment
-- Export the path to msspec package in the PYTHONPATH variable
-
-
-
-To create a self-extracible archive
-===================================
-
-If you want to create a setup program to install msspec:
-
-At the root of the repo, type in
 
 ```Bash
-make selfex
+pip install -e .
 ```
 
-This will compile the code and create the results of unit tests, then it will create a self-extractible archive in the package folder
+That's all. All you need to do each time you want to work with msspec is activating the virtual environment
-
-
-To install the \*.setup file
-============================
-
-Just execute the file with a shell
-
-```Bash
-sh ./MsSpec-###.setup
-```
-
-Replace ### with the version number.
-
-To automatically accept the defaults you could type in
-
-```Bash
-sh ./MsSpec-###.setup --accept -- -y
-```
-
-and to make the install process verbose:
-
-```Bash
-sh ./MsSpec-###.setup -- -d
-```
-
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doc/source/title.svg

@@ -211,7 +211,7 @@
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+          <text xml:space="preserve" style="font-style:normal;font-weight:normal;font-size:10.53155231px;line-height:1.25;font-family:sans-serif;letter-spacing:0px;word-spacing:0px;fill:#626262;fill-opacity:1;stroke:none;stroke-width:0.2632888;" x="10.515821" y="52.373512" id="____dev_version" inkscape:label="#text995"><tspan sodipodi:role="line" id="dev_version" x="10.515821" y="52.373512" style="font-style:normal;font-variant:normal;font-weight:normal;font-stretch:normal;font-size:5.64444447px;font-family:sans-serif;-inkscape-font-specification:sans-serif;fill:#626262;stroke-width:0.2632888;fill-opacity:1;">post release: 51</tspan></text>
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