Work on install script
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23
Makefile
23
Makefile
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@ -22,8 +22,27 @@ purge: clean
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selfex: purge
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@echo "Creating the self-extractible setup program... "
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# update the version
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@cp ./src/msspec/version.py ./src/msspec/version.py.bak
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@echo "__version__ = \"$(VERSION)\"" > ./src/msspec/version.py
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$(MAKESELF) --license ./license.txt --notemp ./src $(SETUPFILE) "Python MsSpec" ./install.sh
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@mv ./src/msspec/version.py.bak ./src/msspec/version.py
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# create the *.lsm file
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@echo "Begin4" > pymsspec.lsm
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@echo "Title: Python MsSpec" >> pymsspec.lsm
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@echo "Version: $(VERSION)" >> pymsspec.lsm
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@echo "Entered-date: `date +%Y-%m-%d`" >> pymsspec.lsm
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@echo "Description: A multiple scattering package for spectroscopies using electrons to probe materials" >> pymsspec.lsm
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@echo "Keywords: " >> pymsspec.lsm
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@echo "Author: sylvain.tricot@univ-rennes1.fr (Sylvain Tricot), didier.sebilleau@univ-rennes1.fr (Didier Sébilleau)" >> pymsspec.lsm
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@echo "Maintained-by: sylvain.tricot@univ-rennes1.fr (Sylvain Tricot)" >> pymsspec.lsm
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@echo "Primary-site: https://msspec.cnrs.fr" >> pymsspec.lsm
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@echo "Alternate-site:" >> pymsspec.lsm
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@echo "Original-site:" >> pymsspec.lsm
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@echo "Platforms:" >> pymsspec.lsm
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@echo "Copying-policy: Gnu Library General Public License (GLPL) 2.0" >> pymsspec.lsm
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@echo "End" >> pymsspec.lsm
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$(MAKESELF) --license ./license.txt --lsm ./pymsspec.lsm --notemp ./src $(SETUPFILE) "Python MsSpec" ./install.sh
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@mv ./src/msspec/version.py.bak ./src/msspec/version.py
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@rm ./pymsspec.lsm
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303
src/install.sh
303
src/install.sh
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@ -1,3 +1,304 @@
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#!/bin/bash
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make install
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PYTHON_VERSION=python3
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VERSION=$(cat ./msspec/version.py|cut -d\" -f2)
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DEFAULT_DEST="${HOME}/.local/share"
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DEFAULT_BIN="${HOME}/.local/bin"
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BYPASS="n"
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DEBUG="n"
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TIMEOUT=5
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ECHO="/bin/echo -e"
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DATE=$(date +%Y%m%d_%H%M%S)
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LOGFILE="${HOME}/msspec_install_${DATE}.log"
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GETOUTFILE=$(mktemp)
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LOCALBIN=$HOME/.local/bin
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LINUX_OS="other_linux"
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trap "abort_install" 2
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trap "error_exit" 1 3 4 6
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init_install () {
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${ECHO} "Installation started on $(date)" > ${LOGFILE}
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${ECHO} "0" > ${GETOUTFILE}
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get_os
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}
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abort_install () {
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${ECHO} "Installation aborted by the user" >> ${LOGFILE}
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error_exit
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}
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log_message () {
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${ECHO} "================================================================================" >> ${LOGFILE}
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${ECHO} "$1" >> ${LOGFILE}
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${ECHO} "================================================================================" >> ${LOGFILE}
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}
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cleanup () {
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stty echo
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rm -rf ${GETOUTFILE}
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}
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error_exit () {
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# An error occured
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${ECHO} ""
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${ECHO} " /!\ An error occured during the installation process."
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${ECHO} " Please see the $(basename ${LOGFILE}) file in your HOME folder"
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${ECHO} " for more informations. "
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${ECHO} " Below is an excerpt of the last 10 lines: "
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${ECHO} ""
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tail -v -n 10 "${LOGFILE}"
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rm -rf ${DEST_FOLDER} 2>/dev/null
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cleanup && exit 1
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}
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get_os () {
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for os in "ubuntu" "mageia" "archlinux"; do
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cat /etc/*release /etc/*version /etc/*issue 2>/dev/null | grep -i "$os" 2>/dev/null 1>/dev/null
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if test $? -eq 0; then
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LINUX_OS="$os"
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break
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fi
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done
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}
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read_yes_no () {
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PROMPT="$1"
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DEFAULT="$2"
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BYPASS="$3"
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ANSWER=""
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RESPONSE=""
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VALID=1
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while test $VALID -ne 0; do
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test "$BYPASS" = "y" || read -p "${PROMPT} (y/n) [${DEFAULT}]? " "RESPONSE"
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ANSWER="${RESPONSE:-${DEFAULT}}"
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case "${ANSWER}" in
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y|n) VALID=0 ;;
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*) echo "Invalid choice, please answer \"y\" or \"n\"."; VALID=1 ;;
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esac
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done
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}
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create_folder () {
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FOLDER="$1"
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ERR_MKDIR=1
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ERR_ABORT=2
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ERR_PERMS=3
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if ! test -d "${FOLDER}" ; then
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read_yes_no "The folder \"${FOLDER}\" does not exist. Should I create it" "y" "$BYPASS"
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case "${ANSWER}" in
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y) mkdir -p "${FOLDER}" 2>>${LOGFILE} 1>>${LOGFILE} || return $ERR_MKDIR;;
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n) ${ECHO} "Installation aborted by the user" >>${LOGFILE} && return $ERR_ABORT ;;
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esac
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fi
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if ! test -w "${FOLDER}" ; then
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${ECHO} "You do not have permission to write into \"${FOLDER}\"." >>${LOGFILE}
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return $ERR_PERMS
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fi
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}
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common_install () {
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case $LINUX_OS in
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ubuntu) # raise privileges
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#sudo ${ECHO} "" || exit ;
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wrap "ubuntu_prerequistes" "Installing Ubuntu specific packages" ;
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;;
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mageia) stty -echo; printf "Please enter root password: "; read PASSWORD; stty echo; printf "\n";
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wrap "mageia_prerequistes" "Installing Mageia specific packages" ;
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;;
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*) # message for other linux distrib
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${ECHO} "Please make sure BEFORE going on with the install program"
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${ECHO} "that you do have already installed on your computer the"
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${ECHO} "following list of softwares or libraries:"
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${ECHO} ""
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cat ./distro-requirements
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${ECHO} ""
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if test "$BYPASS" = "n"; then
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read -p "Type y to go on, or type n to quit: " "ANSWER"
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case $ANSWER in
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y) ;;
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*) exit 1 ;;
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esac
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fi
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;;
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esac
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}
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wrap () {
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log_message "$2"
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if [ "$DEBUG" = "y" ]; then
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eval "($1) 2>&1" | tee -a ${LOGFILE}
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echo ${PIPESTATUS[0]} >${GETOUTFILE}
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rc=$(cat $GETOUTFILE)
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if [ $rc != 0 ]; then
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error_exit
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fi
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else
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eval "($1) 2>>${LOGFILE} 1>>${LOGFILE}" || echo $? >${GETOUTFILE} &
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patience "$2"
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fi
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}
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local_install () {
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init_install
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if [ "$BYPASS" = "n" ]; then
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${ECHO} "Thanks for choosing MsSpec"
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${ECHO} ""
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${ECHO} "This program will install the MsSpec distribution on your computer"
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${ECHO} -n "Press C^c to cancel now... "
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for i in $(seq -s" " 0 $TIMEOUT); do
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${ECHO} -n "\b";
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${ECHO} -n $(( $TIMEOUT-i ));
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sleep 1;
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done
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${ECHO} ""
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fi
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# Create the destination folder
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ANSWER=""
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test "$BYPASS" = "y" || read -p "Please, type in the base installation folder ["${DEFAULT_DEST}"]: " "ANSWER"
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DEST_FOLDER="${ANSWER:-$DEFAULT_DEST}/MsSpec-${VERSION}"
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create_folder "${DEST_FOLDER}" || error_exit
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export DEST_FOLDER
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ANSWER=""
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test "$BYPASS" = "y" || read -p "Please, type in the folder where to place the binary ["${DEFAULT_BIN}"]: " "ANSWER"
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BIN_FOLDER="${ANSWER:-$DEFAULT_BIN}"
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create_folder "${BIN_FOLDER}" || error_exit
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export BIN_FOLDER
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# create a virtualenv
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# check if we are in a virtualenv and exit if so
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if [ x"$VIRTUAL_ENV" != x ]; then
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${ECHO} "Installation from a previous virtualenv is not yet supported. Please deactivate it and restart the setup program." >>${LOGFILE}
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error_exit
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fi
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wrap "virtualenv -v --python=${PYTHON_VERSION} --system-site-packages --prompt=\"(msspec-${VERSION}) \" ${DEST_FOLDER}/venv" \
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"Create a Python virtual environment"
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. ${DEST_FOLDER}/venv/bin/activate
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# install pymsspec
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wrap "make install" \
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"Installing pymsspec python package and its dependencies"
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# deactivate the virtualenv
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deactivate
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#
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## move the frontend to the binary folder
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##wrap "mkdir -p ${LOCALBIN} && \
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## cp ./msspec ${LOCALBIN} && chmod u+x ${LOCALBIN}/msspec && \
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## ${ECHO} \"msspec installed in ${LOCALBIN}\"" \
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## "Installing the msspec frontend"
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# "cp ./msspec ${BIN_FOLDER} && chmod ugo+rx ${BIN_FOLDER}/msspec" "Installing the msspec frontend"
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#
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## move the uninstal script
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#wrap "cp ./uninstall.sh ${DEST}" "Moving the uninstall script"
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#
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# installation was a succes so move the logfile to the DEST directory
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wrap "cp ${LOGFILE} ${DEST_FOLDER}/msspec_install.log" "Moving the logfile"
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# self-explanatory
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success_message
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}
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update_path () {
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# check if the shell path contains $BIN_FOLDER
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SHELLRC="$HOME/.$(basename $SHELL)rc"
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${ECHO} "$PATH" | grep "${BIN_FOLDER}" 2>/dev/null 1>/dev/null
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if test $? -ne 0; then
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${ECHO} "" >> $SHELLRC
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${ECHO} "# Add the user's local binary folder" >> $SHELLRC
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${ECHO} "export PATH=${BIN_FOLDER}:\$PATH" >> $SHELLRC
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${ECHO} "Your PATH variable has been updated, the folder"
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${ECHO} "${BIN_FOLDER} has been added to it."
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${ECHO} ""
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${ECHO} "Please source again your shell configuration file by typing:"
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${ECHO} "source $SHELLRC"
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fi
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}
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success_message () {
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${ECHO} "========================================================"
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${ECHO} "MsSpec was successfully installed."
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${ECHO} "========================================================"
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}
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patience () {
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MSG=$1
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PID=$!
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i=0
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${ECHO} -n "$MSG... "
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while ps -p $PID > /dev/null
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do
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sleep 0.1
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case $i in
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0) ${ECHO} -n "\b\b- " ;;
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1) ${ECHO} -n "\b\b\\ " ;;
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2) ${ECHO} -n "\b\b| " ;;
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3) ${ECHO} -n "\b\b/ "; i=-1 ;;
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esac
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i=$((i+1))
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done
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if test $(cat ${GETOUTFILE}) -ne 0; then
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${ECHO} "\b\b Aborted!"
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error_exit
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fi
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${ECHO} "\b\b Done."
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}
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#create_dest_folder
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#echo $DEST_FOLDER
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#exit
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while getopts "p:b:yd" option
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do
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case $option in
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p) export DEFAULT_DEST="$OPTARG"
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;;
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b) export DEFAULT_BIN="$OPTARG"
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;;
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y) export BYPASS="y"
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;;
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d) export DEBUG="y"
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;;
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esac
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done
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local_install
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10
src/setup.py
10
src/setup.py
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@ -7,4 +7,12 @@ import msspec
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setup(name='msspec',
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version=msspec.__version__,
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include_package_data=True,
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packages=find_packages(include='msspec.*'))
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packages=find_packages(include='msspec.*'),
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install_requires=[
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'ase',
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'h5py',
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'lxml',
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'pint',
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'terminaltables',
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'pycairo',
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])
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