Simplify the install process.
The installation script does not try anymore to create a virtual environment. A message at the begining recommends to the user to be in a virtual env. That way it is possible to use virtualenv, conda, python - m venv or none of this to create (or not) a virtual environment. It's up to the user. The script is simpler and *should* be POSIX compliant Files that have been modified in this commit: - Makefile - src/Makefile - src/msspec/spec/fortran/Makefile - src/msspec/phagen/fortran/Makefile - src/install.sh
This commit is contained in:
parent
4a5f6f1161
commit
4eceb1bf26
51
Makefile
51
Makefile
|
|
@ -1,34 +1,28 @@
|
|||
MAKESELF:=makeself
|
||||
#LICENSE:=$(cat ./license.txt)
|
||||
#VERSION:=$(shell cd src && python -c "import msspec; print(msspec.__version__)")
|
||||
VERSION:=$(shell git describe|sed 's/-\([[:digit:]]\+\)-.*/\.post\1/')
|
||||
SETUPFILE:=MsSpec-$(VERSION).setup
|
||||
|
||||
.PHONY: clean purge version selfex
|
||||
|
||||
VERBOSE:=0
|
||||
ifeq ($(VERBOSE),0)
|
||||
SUPPRESS_OUPUT:=1>/dev/null 2>/dev/null
|
||||
MAKEFLAGS += --no-print-directory
|
||||
else
|
||||
SUPPRESS_OUPUT:=
|
||||
endif
|
||||
|
||||
|
||||
clean:
|
||||
@echo "Cleaning all..."
|
||||
@find ./src -type f -name '*.pyc' -exec rm -f {} +
|
||||
@find ./src -type d -name '__pycache__' -exec rm -rf {} +
|
||||
+$(MAKE) -C src/ clean
|
||||
+$(MAKE) -C doc/ clean
|
||||
|
||||
version:
|
||||
@python ./CI/update_version.py
|
||||
.PHONY: clean version selfex
|
||||
|
||||
|
||||
purge: clean
|
||||
@echo "Purging all..."
|
||||
@rm -rf *.setup
|
||||
+$(MAKE) -C src/ purge
|
||||
|
||||
selfex:
|
||||
selfex: clean
|
||||
@echo "Creating the self-extractible setup program... "
|
||||
# update the version
|
||||
# update the version
|
||||
@cp ./src/msspec/version.py ./src/msspec/version.py.bak
|
||||
@echo "__version__ = \"$(VERSION)\"" > ./src/msspec/version.py
|
||||
# create the *.lsm file
|
||||
# create the package folder
|
||||
@mkdir -p package
|
||||
# create the *.lsm file
|
||||
@echo "Begin4" > msspec.lsm
|
||||
@echo "Title: Python MsSpec" >> msspec.lsm
|
||||
@echo "Version: $(VERSION)" >> msspec.lsm
|
||||
|
|
@ -43,7 +37,22 @@ selfex:
|
|||
@echo "Platforms:" >> msspec.lsm
|
||||
@echo "Copying-policy: Gnu Library General Public License (GLPL) 2.0" >> msspec.lsm
|
||||
@echo "End" >> msspec.lsm
|
||||
$(MAKESELF) --license "./license.txt" --lsm ./msspec.lsm ./src $(SETUPFILE) "Python MsSpec" ./install.sh
|
||||
# create the self-extractible archive
|
||||
@$(MAKESELF) --license "./license.txt" --lsm ./msspec.lsm ./src package/$(SETUPFILE) "Python MsSpec" ./install.sh $(SUPPRESS_OUPUT)
|
||||
# restore previous version.py file and remove *.lsm file
|
||||
@mv ./src/msspec/version.py.bak ./src/msspec/version.py
|
||||
@rm ./msspec.lsm
|
||||
|
||||
version:
|
||||
@python ./CI/update_version.py
|
||||
|
||||
clean:
|
||||
@echo "Cleaning all..."
|
||||
@find ./src -type f -name '*.pyc' -exec rm -f {} +
|
||||
@find ./src -type d -name '__pycache__' -exec rm -rf {} +
|
||||
@rm -rf src/dist
|
||||
@rm -rf src/*.egg*
|
||||
@+$(MAKE) -C src/ clean $(SUPPRESS_OUPUT)
|
||||
@+$(MAKE) -C doc/ clean $(SUPPRESS_OUPUT)
|
||||
@rm -rf package
|
||||
|
||||
|
|
|
|||
38
src/Makefile
38
src/Makefile
|
|
@ -1,22 +1,42 @@
|
|||
VERSION:=$(shell python -c "import msspec; print(msspec.__version__)")
|
||||
|
||||
VERBOSE:=0
|
||||
ifeq ($(VERBOSE),0)
|
||||
SUPPRESS_OUPUT:=1>/dev/null 2>/dev/null
|
||||
MAKEFLAGS += --no-print-directory --silent
|
||||
else
|
||||
SUPPRESS_OUPUT:=
|
||||
endif
|
||||
|
||||
|
||||
install: sdist
|
||||
@pip install dist/msspec-$(VERSION).tar.gz
|
||||
@pip install dist/msspec-$(VERSION).tar.gz $(SUPPRESS_OUPUT)
|
||||
|
||||
sdist: pybinding
|
||||
@python setup.py sdist
|
||||
@echo "Creating Python source distribution..."
|
||||
@python setup.py sdist $(SUPPRESS_OUPUT)
|
||||
|
||||
pybinding:
|
||||
+$(MAKE) -C msspec/spec/fortran pybinding
|
||||
+$(MAKE) -C msspec/phagen/fortran pybinding
|
||||
@echo "Building Python binding for phagen and spec..."
|
||||
@+$(MAKE) -C msspec/spec/fortran pybinding $(SUPPRESS_OUPUT)
|
||||
@+$(MAKE) -C msspec/phagen/fortran pybinding $(SUPPRESS_OUPUT)
|
||||
|
||||
results: pybinding
|
||||
@echo "Generating results for unittests"
|
||||
@python -c "from msspec.tests import create_tests_results; create_tests_results()" $(SUPPRESS_OUPUT)
|
||||
|
||||
tests: pybinding
|
||||
@echo "Runing unittests"
|
||||
@python -c "from msspec.tests import run_tests; run_tests()" 1>/dev/null
|
||||
|
||||
clean:
|
||||
+$(MAKE) -C msspec/spec/fortran clean
|
||||
+$(MAKE) -C msspec/phagen/fortran clean
|
||||
@echo "Cleaning all..."
|
||||
@+$(MAKE) -C msspec/spec/fortran clean $(SUPPRESS_OUPUT)
|
||||
@+$(MAKE) -C msspec/phagen/fortran clean $(SUPPRESS_OUPUT)
|
||||
# remove previous sdist
|
||||
@rm -rf dist
|
||||
@rm -rf *.egg*
|
||||
|
||||
purge: clean
|
||||
+$(MAKE) -C msspec/spec/fortran purge
|
||||
+$(MAKE) -C msspec/phagen/fortran purge
|
||||
help:
|
||||
@echo "help message"
|
||||
|
||||
|
|
|
|||
280
src/install.sh
280
src/install.sh
|
|
@ -1,48 +1,40 @@
|
|||
#!/bin/bash
|
||||
#!/bin/sh
|
||||
# vim: set ts=4 sw=4 sts noet mouse=a fdm=indent:
|
||||
|
||||
DEFAULT_DEST="${HOME}/.local/share"
|
||||
DEFAULT_BIN="${HOME}/.local/bin"
|
||||
BYPASS="n"
|
||||
DEBUG="n"
|
||||
|
||||
SCRIPT_NAME=$(basename "$0")
|
||||
PYTHON=python3
|
||||
VERSION=$(cat ./msspec/version.py|cut -d\" -f2)
|
||||
TIMEOUT=5
|
||||
DEST_ALREADY_EXISTS="n"
|
||||
ECHO="/bin/echo -e"
|
||||
DATE=$(date +%Y%m%d_%H%M%S)
|
||||
LOGFILE="${HOME}/msspec_install_${DATE}.log"
|
||||
GETOUTFILE=$(mktemp)
|
||||
LOCALBIN=$HOME/.local/bin
|
||||
LINUX_OS="other_linux"
|
||||
|
||||
|
||||
trap "abort_install" 2
|
||||
trap "error_exit" 1 3 4 6
|
||||
trap "abort_install" INT
|
||||
trap "error_exit" HUP QUIT ILL ABRT
|
||||
|
||||
init_install () {
|
||||
${ECHO} "Installation started on $(date)" > ${LOGFILE}
|
||||
${ECHO} "0" > ${GETOUTFILE}
|
||||
get_os
|
||||
printf "Installation started on %s\n" "$(date)" > "${LOGFILE}"
|
||||
printf "0" > "${GETOUTFILE}"
|
||||
|
||||
if [ "$BYPASS" = "n" ]; then
|
||||
${ECHO} ""
|
||||
${ECHO} "This program will install the MsSpec distribution on your computer"
|
||||
${ECHO} -n "Press C^c to cancel now... "
|
||||
for i in $(seq -s" " 0 $TIMEOUT); do
|
||||
${ECHO} -n "\b";
|
||||
${ECHO} -n $(( $TIMEOUT-i ));
|
||||
sleep 1;
|
||||
done
|
||||
${ECHO} ""
|
||||
printf ""
|
||||
printf "This program will install the msspec python package on your system.\n"
|
||||
printf "It is highly recommended to run this installation process within a\n"
|
||||
printf "Python virtual environment. If you want to create and/or activate one,\n"
|
||||
printf "you can answer \"n\" now and restart the setup program later.\n"
|
||||
|
||||
read_yes_no "Do you wish to continue" "y"
|
||||
case "${ANSWER}" in
|
||||
y) ;;
|
||||
n) abort_install ;;
|
||||
esac
|
||||
fi
|
||||
|
||||
}
|
||||
|
||||
abort_install () {
|
||||
${ECHO} "Installation aborted by the user" >> ${LOGFILE}
|
||||
log_message "Installation aborted by the user"
|
||||
error_exit
|
||||
}
|
||||
|
||||
|
|
@ -57,60 +49,41 @@ log_message2 () {
|
|||
}
|
||||
|
||||
cleanup () {
|
||||
stty echo
|
||||
rm -rf ${GETOUTFILE}
|
||||
rm -rf "${GETOUTFILE}"
|
||||
}
|
||||
|
||||
error_exit () {
|
||||
# An error occured
|
||||
printf "\n"
|
||||
printf " /!\ An error occured during the installation process.\n"
|
||||
printf " Please see the $(basename ${LOGFILE}) file in your HOME folder\n"
|
||||
printf " Please see the %s file in your HOME folder\n" "$(basename "${LOGFILE}")"
|
||||
printf " for more informations.\n"
|
||||
printf " Below is an excerpt of the last 10 lines:\n"
|
||||
printf "\n"
|
||||
tail -v -n 10 "${LOGFILE}"
|
||||
tail "${LOGFILE}"
|
||||
|
||||
# uninstall if needed
|
||||
pip uninstall -y msspec
|
||||
|
||||
# if the DEST_FOLDER existed before, do NOT delete it
|
||||
if [ x"$DEST_ALREADY_EXISTS" = "xn" ]; then
|
||||
rm -rf ${DEST_FOLDER} 2>/dev/null
|
||||
fi
|
||||
cleanup && exit 1
|
||||
}
|
||||
|
||||
|
||||
|
||||
get_os () {
|
||||
for os in "ubuntu" "mageia" "archlinux"; do
|
||||
cat /etc/*release /etc/*version /etc/*issue 2>/dev/null | grep -i "$os" 2>/dev/null 1>/dev/null
|
||||
if test $? -eq 0; then
|
||||
LINUX_OS="$os"
|
||||
break
|
||||
fi
|
||||
done
|
||||
|
||||
}
|
||||
|
||||
|
||||
read_yes_no () {
|
||||
DEFAULT="$2"
|
||||
PROMPT="$1 (y/n) [${DEFAULT}]? "
|
||||
|
||||
ANSWER=""
|
||||
RESPONSE=""
|
||||
INPUT=""
|
||||
|
||||
VALID=1
|
||||
while test $VALID -ne 0; do
|
||||
printf "${PROMPT}"
|
||||
if [ x"$BYPASS" = "xn" ]; then
|
||||
read "RESPONSE"
|
||||
printf "%s" "${PROMPT}"
|
||||
if [ x"$BYPASS" = xn ]; then
|
||||
read -r "INPUT"
|
||||
else
|
||||
printf "\n"
|
||||
fi
|
||||
ANSWER="${RESPONSE:-${DEFAULT}}"
|
||||
ANSWER="${INPUT:-${DEFAULT}}"
|
||||
case "${ANSWER}" in
|
||||
y|n) VALID=0 ;;
|
||||
*) printf "Invalid choice, please answer \"y\" or \"n\".\n"; VALID=1 ;;
|
||||
|
|
@ -120,57 +93,13 @@ read_yes_no () {
|
|||
log_message "ANSWER : $ANSWER"
|
||||
}
|
||||
|
||||
|
||||
read_folder () {
|
||||
DEFAULT="$2"
|
||||
PROMPT="$1 [${DEFAULT}]: "
|
||||
|
||||
ANSWER=""
|
||||
unset FOLDER
|
||||
printf "${PROMPT}"
|
||||
if [ x"$BYPASS" = "xn" ]; then
|
||||
read "ANSWER"
|
||||
else
|
||||
printf "\n"
|
||||
fi
|
||||
export FOLDER="${ANSWER:-$DEFAULT}"
|
||||
log_message "QUESTION: $PROMPT"
|
||||
log_message "ANSWER : $FOLDER"
|
||||
}
|
||||
|
||||
|
||||
|
||||
create_folder () {
|
||||
FOLDER="$1"
|
||||
|
||||
ERR_MKDIR=1
|
||||
ERR_ABORT=2
|
||||
ERR_PERMS=3
|
||||
|
||||
if ! test -d "${FOLDER}" ; then
|
||||
read_yes_no "The folder \"${FOLDER}\" does not exist. Should I create it" "y" #"$BYPASS"
|
||||
|
||||
case "${ANSWER}" in
|
||||
y) mkdir -p "${FOLDER}" 2>>${LOGFILE} 1>>${LOGFILE} || return $ERR_MKDIR;;
|
||||
n) log_message2 "Installation aborted by the user" && return $ERR_ABORT ;;
|
||||
esac
|
||||
fi
|
||||
|
||||
if ! test -w "${FOLDER}" ; then
|
||||
log_message2 "You do not have permission to write into \"${FOLDER}\"."
|
||||
return $ERR_PERMS
|
||||
fi
|
||||
}
|
||||
|
||||
|
||||
wrap () {
|
||||
log_message "================================================================================"
|
||||
log_message "$2"
|
||||
log_message "================================================================================"
|
||||
if [ "$DEBUG" = "y" ]; then
|
||||
eval "($1) 2>&1" | tee -a ${LOGFILE}
|
||||
echo ${PIPESTATUS[0]} >${GETOUTFILE}
|
||||
|
||||
if [ "$DEBUG" = y ]; then
|
||||
printf "%s...\n" "$2"
|
||||
(eval "$1" || echo $? >"${GETOUTFILE}") | tee -a "${LOGFILE}"
|
||||
rc=$(cat $GETOUTFILE)
|
||||
if [ $rc != 0 ]; then
|
||||
error_exit
|
||||
|
|
@ -181,60 +110,38 @@ wrap () {
|
|||
fi
|
||||
}
|
||||
|
||||
update_path () {
|
||||
# check if the shell path contains $BIN_FOLDER
|
||||
SHELLRC="$HOME/.$(basename $SHELL)rc"
|
||||
${ECHO} "$PATH" | grep "${BIN_FOLDER}" 2>/dev/null 1>/dev/null
|
||||
if test $? -ne 0; then
|
||||
${ECHO} "" >> $SHELLRC
|
||||
${ECHO} "# Add the user's local binary folder" >> $SHELLRC
|
||||
${ECHO} "export PATH=${BIN_FOLDER}:\$PATH" >> $SHELLRC
|
||||
${ECHO} "Your PATH variable has been updated, the folder"
|
||||
${ECHO} "${BIN_FOLDER} has been added to it."
|
||||
${ECHO} ""
|
||||
${ECHO} "Please source again your shell configuration file by typing:"
|
||||
${ECHO} "source $SHELLRC"
|
||||
fi
|
||||
}
|
||||
|
||||
|
||||
success_message () {
|
||||
log_message "========================================================"
|
||||
log_message "MsSpec was successfully installed."
|
||||
log_message "========================================================"
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
patience () {
|
||||
MSG=$1
|
||||
MSG="$1"
|
||||
PID=$!
|
||||
i=0
|
||||
${ECHO} -n "$MSG... "
|
||||
printf "%s" "$MSG... "
|
||||
while ps -p $PID > /dev/null
|
||||
do
|
||||
sleep 0.1
|
||||
case $i in
|
||||
0) ${ECHO} -n "\b\b- " ;;
|
||||
1) ${ECHO} -n "\b\b\\ " ;;
|
||||
2) ${ECHO} -n "\b\b| " ;;
|
||||
3) ${ECHO} -n "\b\b/ "; i=-1 ;;
|
||||
0) printf "\b\b- " ;;
|
||||
1) printf "\b\b\\ " ;;
|
||||
2) printf "\b\b| " ;;
|
||||
3) printf "\b\b/ "; i=-1 ;;
|
||||
esac
|
||||
i=$((i+1))
|
||||
i=$(( i+1 ))
|
||||
done
|
||||
if test $(cat ${GETOUTFILE}) -ne 0; then
|
||||
${ECHO} "\b\b Aborted!"
|
||||
if test "$(cat "${GETOUTFILE}")" -ne 0; then
|
||||
printf "\b\b Aborted!"
|
||||
error_exit
|
||||
fi
|
||||
${ECHO} "\b\b Done."
|
||||
printf "\b\b Done.\n"
|
||||
}
|
||||
|
||||
show_help () {
|
||||
echo "Usage: $SCRIPT_NAME [OPTIONS]"
|
||||
echo "List of possible options:"
|
||||
echo " -p FOLDER Default FOLDER for installation."
|
||||
echo " -b FOLDER Default FOLDER for binaries."
|
||||
echo " -y Accept all default choices."
|
||||
echo " -d Debug mode."
|
||||
echo " -h Show this message."
|
||||
|
|
@ -254,7 +161,7 @@ check_dependencies () {
|
|||
command -V gfortran || return 1
|
||||
gcc_ver=$(gcc -dumpversion)
|
||||
echo "You have gfortran version $gcc_ver installed"
|
||||
test $gcc_ver -ge $gcc_ver_min || return 1
|
||||
test "$gcc_ver" -ge "$gcc_ver_min" || return 1
|
||||
log_message "Ok\n"
|
||||
|
||||
# we need libcairo and dev files
|
||||
|
|
@ -266,20 +173,19 @@ check_dependencies () {
|
|||
py_ver_major_min=3
|
||||
py_ver_minor_min=0
|
||||
log_message "Checking if Python >= ${py_ver_major_min}.${py_ver_minor_min}..."
|
||||
message="You need Python version ${py_ver_major_min}.${py_ver_minor_min}"
|
||||
python --version|cut -d" " -f2 || return 1
|
||||
command -V python || return 1
|
||||
py_ver=$(python --version | cut -d" " -f2)
|
||||
echo "You have Python version $py_ver installed"
|
||||
py_ver_major=$(echo $py_ver|cut -d. -f1)
|
||||
py_ver_minor=$(echo $py_ver|cut -d. -f2)
|
||||
test $py_ver_major -ge $py_ver_major_min || return 1
|
||||
test $py_ver_minor -ge $py_ver_minor_min || return 1
|
||||
test "$py_ver_major" -ge "$py_ver_major_min" || return 1
|
||||
test "$py_ver_minor" -ge "$py_ver_minor_min" || return 1
|
||||
log_message "Ok\n"
|
||||
|
||||
# we need virtualenv
|
||||
log_message "Checking if virtualenv is installed..."
|
||||
command -V virtualenv || return 1
|
||||
log_message "Ok\n"
|
||||
#log_message "Checking if virtualenv is installed..."
|
||||
#command -V virtualenv || return 1
|
||||
#log_message "Ok\n"
|
||||
|
||||
}
|
||||
|
||||
|
|
@ -290,91 +196,24 @@ local_install () {
|
|||
# check dependencies
|
||||
wrap "check_dependencies" "Checking dependencies"
|
||||
|
||||
# ask for a place to put the binary
|
||||
#read_folder "Please, type in the folder where to place the binary" "${DEFAULT_BIN}"
|
||||
#BIN_FOLDER=${FOLDER}
|
||||
#create_folder "${BIN_FOLDER}" || error_exit
|
||||
#export BIN_FOLDER
|
||||
# build the Fortran code
|
||||
wrap "make pybinding VERBOSE=1" "Building Phagen and Spec Python dynamic library"
|
||||
|
||||
# If in a virtualenv, ask if we should install inside
|
||||
if [ x"$VIRTUAL_ENV" != x ]; then
|
||||
read_yes_no "You are running a Python virtual environment. Do you wish to install msspec inside ?" "y"
|
||||
case ${ANSWER} in
|
||||
y) # get the python version of this venv...
|
||||
v=$(python -V 2>&1 | cut -d" " -f2 | cut -d. -f1)
|
||||
# and stops if < 3
|
||||
if [ $v -lt 3 ]; then
|
||||
log_message "The Python version of this venv is < 3"
|
||||
error_exit
|
||||
fi
|
||||
;;
|
||||
n) # The user decided to stop there
|
||||
log_message "Please deactivate your virtual environment and restart the setup program."
|
||||
error_exit
|
||||
;;
|
||||
esac
|
||||
# Else, we are not in a virtualenv
|
||||
else
|
||||
pip_opt=""
|
||||
# so ask if we should create one
|
||||
read_yes_no "Do you wish to create a virtual environment to install MsSpec inside" "y"
|
||||
case ${ANSWER} in
|
||||
y) # Create the destination folder
|
||||
read_folder "Please, type in the base installation folder" "${DEFAULT_DEST}"
|
||||
DEST_FOLDER=${FOLDER}/MsSpec-${VERSION}
|
||||
if [ -d $DEST_FOLDER ]; then
|
||||
export DEST_ALREADY_EXISTS="y" # to avoid cleaning the existing DEST_FOLDER in case of any problem
|
||||
read_yes_no "The folder $DEST_FOLDER already exists. Overwrite" "y"
|
||||
case ${ANSWER} in
|
||||
y) # overwrite
|
||||
create_folder "${DEST_FOLDER}" || error_exit
|
||||
;;
|
||||
n) # stop here otherwise
|
||||
error_exit
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
export DEST_FOLDER
|
||||
wrap "virtualenv -vvv --python=${PYTHON} --system-site-packages --prompt=\"(msspec-${VERSION}) \" ${DEST_FOLDER}/venv" \
|
||||
"Create a Python virtual environment"
|
||||
. ${DEST_FOLDER}/venv/bin/activate
|
||||
;;
|
||||
n) # install in the user $HOME
|
||||
pip_opt="--user"
|
||||
;;
|
||||
esac
|
||||
fi
|
||||
# build the source distribution
|
||||
wrap "make sdist VERBOSE=1" "Building msspec python package"
|
||||
|
||||
# build and run setuptools to create a source distribution
|
||||
wrap "make sdist" \
|
||||
"Building MsSpec python package"
|
||||
|
||||
# install the package with pip
|
||||
wrap "pip install $pip_opt dist/msspec-*.tar.gz" \
|
||||
"Installing pymsspec python package and its dependencies"
|
||||
# install the package
|
||||
wrap "make install VERBOSE=1" "Installing the msspec package"
|
||||
|
||||
#
|
||||
## move the frontend to the binary folder
|
||||
##wrap "mkdir -p ${LOCALBIN} && \
|
||||
## cp ./msspec ${LOCALBIN} && chmod u+x ${LOCALBIN}/msspec && \
|
||||
## ${ECHO} \"msspec installed in ${LOCALBIN}\"" \
|
||||
## "Installing the msspec frontend"
|
||||
# "cp ./msspec ${BIN_FOLDER} && chmod ugo+rx ${BIN_FOLDER}/msspec" "Installing the msspec frontend"
|
||||
#
|
||||
## move the uninstal script
|
||||
#wrap "cp ./uninstall.sh ${DEST}" "Moving the uninstall script"
|
||||
#
|
||||
# Run unit tests ?
|
||||
read_yes_no "Do you wish to run unit tests (${LOGFILE})" "y"
|
||||
if [ x"${ANSWER}" = "xy" ]; then
|
||||
wrap "python -c \"from msspec.tests import run_tests; run_tests()\"" \
|
||||
"Runing test suite"
|
||||
read_yes_no "Do you wish to run unit tests" "y"
|
||||
if [ x"${ANSWER}" = xy ]; then
|
||||
wrap "make tests" "Runing test suite"
|
||||
fi
|
||||
|
||||
|
||||
# installation was a succes so ask if we keep the log file
|
||||
read_yes_no "Do you wish to keep the log file (${LOGFILE})" "n"
|
||||
if [ x"${ANSWER}" = "xn" ]; then
|
||||
if [ x"${ANSWER}" = xn ]; then
|
||||
rm -f "${LOGFILE}"
|
||||
fi
|
||||
|
||||
|
|
@ -382,15 +221,9 @@ local_install () {
|
|||
success_message
|
||||
}
|
||||
|
||||
|
||||
|
||||
while getopts "p:b:yd" option
|
||||
do
|
||||
case $option in
|
||||
p) export DEFAULT_DEST="$OPTARG"
|
||||
;;
|
||||
b) export DEFAULT_BIN="$OPTARG"
|
||||
;;
|
||||
y) export BYPASS="y"
|
||||
;;
|
||||
d) export DEBUG="y"
|
||||
|
|
@ -402,7 +235,4 @@ do
|
|||
esac
|
||||
done
|
||||
|
||||
|
||||
|
||||
|
||||
local_install
|
||||
|
|
|
|||
|
|
@ -1,31 +1,35 @@
|
|||
COMP=gfortran
|
||||
OPTS := -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan
|
||||
OPTs :=
|
||||
F2PY:=f2py3
|
||||
|
||||
COMP_OPTS:= -O2 -ffast-math
|
||||
F2PY_OPTS:=
|
||||
|
||||
DEBUG:=0
|
||||
|
||||
objects_src := phagen_scf.f
|
||||
objects := $(patsubst %.f,%.o, $(objects_src))
|
||||
|
||||
ifeq ($(DEBUG),1)
|
||||
COMP_OPTS:=$(COMP_OPTS) -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan
|
||||
F2PY_OPTS:=$(F2PY_OPTS) --debug-capi --debug
|
||||
endif
|
||||
|
||||
.PHONY: clean purge pybinding
|
||||
|
||||
.PHONY: clean
|
||||
|
||||
pybinding: libphagen.so
|
||||
|
||||
libphagen.so: $(objects) main.f
|
||||
@echo "building Python binding..."
|
||||
@f2py3 -I. $(objects) -c -m libphagen main.f
|
||||
#f2py3 -I. $(objects) --debug-capi --debug -c -m libphagen main.f
|
||||
@$(F2PY) -I. $(objects) $(F2PY_OPTS)-c -m libphagen main.f
|
||||
@cp libphagen.cpython*.so ../
|
||||
@mv libphagen.cpython*.so libphagen.so
|
||||
|
||||
$(objects): $(objects_src)
|
||||
@echo "compiling subroutines and functions..."
|
||||
@$(COMP) $(OPTS) -fPIC -c $^
|
||||
@echo "compiling subroutines and functions for phagen..."
|
||||
@$(COMP) $(COMP_OPTS) -fPIC -c $^
|
||||
|
||||
clean:
|
||||
@echo "cleaning..."
|
||||
rm -rf *.so *.o *.mod
|
||||
|
||||
purge: clean
|
||||
@echo "Purging..."
|
||||
rm -rf ../*.so
|
||||
|
||||
@rm -rf *.so *.o *.mod
|
||||
@rm -rf ../*.so
|
||||
|
|
|
|||
|
|
@ -1,21 +1,30 @@
|
|||
COMP=gfortran
|
||||
COMP:=gfortran
|
||||
F2PY:=f2py3
|
||||
|
||||
COMP_OPTS:= -O2 -ffast-math
|
||||
F2PY_OPTS:=
|
||||
|
||||
DEBUG:=0
|
||||
|
||||
objects_src := dim_mod.f modules.f renormalization.f allocation.f spec.f
|
||||
objects := $(patsubst %.f,%.o, $(objects_src))
|
||||
|
||||
OPTS := -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan
|
||||
|
||||
EXE=prog
|
||||
|
||||
ifeq ($(DEBUG),1)
|
||||
COMP_OPTS:=$(COMP_OPTS) -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan
|
||||
F2PY_OPTS:=$(F2PY_OPTS) --debug-capi --debug
|
||||
endif
|
||||
|
||||
.PHONY: clean purge pybinding
|
||||
|
||||
|
||||
.PHONY: clean
|
||||
|
||||
pybinding: libspec.so
|
||||
|
||||
libspec.so: $(objects) main.f
|
||||
@echo "building Python binding..."
|
||||
#@f2py3 -I. $(objects) -c -m libspec main.f
|
||||
@f2py3 -I. $(objects) --debug-capi --debug -c -m libspec main.f
|
||||
@$(F2PY) -I. $(objects) $(F2PY_OPTS) -c -m libspec main.f
|
||||
@cp libspec.cpython*.so ../
|
||||
@mv libspec.cpython*.so libspec.so
|
||||
|
||||
|
|
@ -26,16 +35,13 @@ exe: $(objects) prog.f
|
|||
|
||||
|
||||
$(objects): $(objects_src)
|
||||
@echo "compiling subroutines and functions..."
|
||||
#$(COMP) -cpp -fPIC -O2 -ffast-math -mcmodel=large -fdefault-real-4 -c $^
|
||||
#@$(COMP) $(OPTS) -fPIC -mcmodel=large -c $^
|
||||
@$(COMP) $(OPTS) -fPIC -c $^
|
||||
@echo "compiling subroutines and functions for spec..."
|
||||
# $(COMP) -cpp -fPIC -O2 -ffast-math -mcmodel=large -fdefault-real-4 -c $^
|
||||
# @$(COMP) $(OPTS) -fPIC -mcmodel=large -c $^
|
||||
@$(COMP) $(COMP_OPTS) -fPIC -c $^
|
||||
|
||||
clean:
|
||||
@echo "cleaning..."
|
||||
@rm -rf *.so *.o *.mod
|
||||
|
||||
purge: clean
|
||||
@echo "Purging..."
|
||||
@rm -rf $(EXE)
|
||||
@rm -rf ../*.so
|
||||
|
|
|
|||
Loading…
Reference in New Issue