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msspec_python3
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Simplify the install process. 

The installation script does not try anymore to create a virtual environment.
A message at the begining recommends to the user to be in a virtual env. That way
it is possible to use virtualenv, conda, python - m venv or none of this to
create (or not) a virtual environment. It's up to the user.

The script is simpler and *should* be POSIX compliant

Files that have been modified in this commit:
- Makefile
- src/Makefile
- src/msspec/spec/fortran/Makefile
- src/msspec/phagen/fortran/Makefile
- src/install.sh
This commit is contained in:
Sylvain Tricot 2019-11-28 18:35:37 +01:00
parent 4a5f6f1161
commit 4eceb1bf26
5 changed files with 150 additions and 281 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

51
Makefile
View File

@ -1,34 +1,28 @@
MAKESELF:=makeself MAKESELF:=makeself
#LICENSE:=$(cat ./license.txt)
#VERSION:=$(shell cd src && python -c "import msspec; print(msspec.__version__)")
VERSION:=$(shell git describe|sed 's/-\([[:digit:]]\+\)-.*/\.post\1/') VERSION:=$(shell git describe|sed 's/-\([[:digit:]]\+\)-.*/\.post\1/')
SETUPFILE:=MsSpec-$(VERSION).setup SETUPFILE:=MsSpec-$(VERSION).setup
.PHONY: clean purge version selfex
VERBOSE:=0
ifeq ($(VERBOSE),0)
SUPPRESS_OUPUT:=1>/dev/null 2>/dev/null
MAKEFLAGS += --no-print-directory
else
SUPPRESS_OUPUT:=
endif
clean: .PHONY: clean version selfex
@echo "Cleaning all..."
@find ./src -type f -name '*.pyc' -exec rm -f {} +
@find ./src -type d -name '__pycache__' -exec rm -rf {} +
+$(MAKE) -C src/ clean
+$(MAKE) -C doc/ clean
version:
@python ./CI/update_version.py
purge: clean selfex: clean
@echo "Purging all..."
@rm -rf *.setup
+$(MAKE) -C src/ purge
selfex:
@echo "Creating the self-extractible setup program... " @echo "Creating the self-extractible setup program... "
# update the version # update the version
@cp ./src/msspec/version.py ./src/msspec/version.py.bak @cp ./src/msspec/version.py ./src/msspec/version.py.bak
@echo "__version__ = \"$(VERSION)\"" > ./src/msspec/version.py @echo "__version__ = \"$(VERSION)\"" > ./src/msspec/version.py
# create the *.lsm file # create the package folder
@mkdir -p package
# create the *.lsm file
@echo "Begin4" > msspec.lsm @echo "Begin4" > msspec.lsm
@echo "Title: Python MsSpec" >> msspec.lsm @echo "Title: Python MsSpec" >> msspec.lsm
@echo "Version: $(VERSION)" >> msspec.lsm @echo "Version: $(VERSION)" >> msspec.lsm
@ -43,7 +37,22 @@ selfex:
@echo "Platforms:" >> msspec.lsm @echo "Platforms:" >> msspec.lsm
@echo "Copying-policy: Gnu Library General Public License (GLPL) 2.0" >> msspec.lsm @echo "Copying-policy: Gnu Library General Public License (GLPL) 2.0" >> msspec.lsm
@echo "End" >> msspec.lsm @echo "End" >> msspec.lsm
$(MAKESELF) --license "./license.txt" --lsm ./msspec.lsm ./src $(SETUPFILE) "Python MsSpec" ./install.sh # create the self-extractible archive
@$(MAKESELF) --license "./license.txt" --lsm ./msspec.lsm ./src package/$(SETUPFILE) "Python MsSpec" ./install.sh $(SUPPRESS_OUPUT)
# restore previous version.py file and remove *.lsm file
@mv ./src/msspec/version.py.bak ./src/msspec/version.py @mv ./src/msspec/version.py.bak ./src/msspec/version.py
@rm ./msspec.lsm @rm ./msspec.lsm
version:
@python ./CI/update_version.py
clean:
@echo "Cleaning all..."
@find ./src -type f -name '*.pyc' -exec rm -f {} +
@find ./src -type d -name '__pycache__' -exec rm -rf {} +
@rm -rf src/dist
@rm -rf src/*.egg*
@+$(MAKE) -C src/ clean $(SUPPRESS_OUPUT)
@+$(MAKE) -C doc/ clean $(SUPPRESS_OUPUT)
@rm -rf package

38
src/Makefile
View File

@ -1,22 +1,42 @@
VERSION:=$(shell python -c "import msspec; print(msspec.__version__)") VERSION:=$(shell python -c "import msspec; print(msspec.__version__)")
VERBOSE:=0
ifeq ($(VERBOSE),0)
SUPPRESS_OUPUT:=1>/dev/null 2>/dev/null
MAKEFLAGS += --no-print-directory --silent
else
SUPPRESS_OUPUT:=
endif
install: sdist install: sdist
@pip install dist/msspec-$(VERSION).tar.gz @pip install dist/msspec-$(VERSION).tar.gz $(SUPPRESS_OUPUT)
sdist: pybinding sdist: pybinding
@python setup.py sdist @echo "Creating Python source distribution..."
@python setup.py sdist $(SUPPRESS_OUPUT)
pybinding: pybinding:
+$(MAKE) -C msspec/spec/fortran pybinding @echo "Building Python binding for phagen and spec..."
+$(MAKE) -C msspec/phagen/fortran pybinding @+$(MAKE) -C msspec/spec/fortran pybinding $(SUPPRESS_OUPUT)
@+$(MAKE) -C msspec/phagen/fortran pybinding $(SUPPRESS_OUPUT)
results: pybinding
@echo "Generating results for unittests"
@python -c "from msspec.tests import create_tests_results; create_tests_results()" $(SUPPRESS_OUPUT)
tests: pybinding
@echo "Runing unittests"
@python -c "from msspec.tests import run_tests; run_tests()" 1>/dev/null
clean: clean:
+$(MAKE) -C msspec/spec/fortran clean @echo "Cleaning all..."
+$(MAKE) -C msspec/phagen/fortran clean @+$(MAKE) -C msspec/spec/fortran clean $(SUPPRESS_OUPUT)
@+$(MAKE) -C msspec/phagen/fortran clean $(SUPPRESS_OUPUT)
# remove previous sdist
@rm -rf dist @rm -rf dist
@rm -rf *.egg* @rm -rf *.egg*
purge: clean help:
+$(MAKE) -C msspec/spec/fortran purge @echo "help message"
+$(MAKE) -C msspec/phagen/fortran purge

280
src/install.sh
View File

@ -1,48 +1,40 @@
#!/bin/bash #!/bin/sh
# vim: set ts=4 sw=4 sts noet mouse=a fdm=indent: # vim: set ts=4 sw=4 sts noet mouse=a fdm=indent:
DEFAULT_DEST="${HOME}/.local/share"
DEFAULT_BIN="${HOME}/.local/bin"
BYPASS="n" BYPASS="n"
DEBUG="n" DEBUG="n"
SCRIPT_NAME=$(basename "$0") SCRIPT_NAME=$(basename "$0")
PYTHON=python3
VERSION=$(cat ./msspec/version.py|cut -d\" -f2) VERSION=$(cat ./msspec/version.py|cut -d\" -f2)
TIMEOUT=5
DEST_ALREADY_EXISTS="n"
ECHO="/bin/echo -e"
DATE=$(date +%Y%m%d_%H%M%S) DATE=$(date +%Y%m%d_%H%M%S)
LOGFILE="${HOME}/msspec_install_${DATE}.log" LOGFILE="${HOME}/msspec_install_${DATE}.log"
GETOUTFILE=$(mktemp) GETOUTFILE=$(mktemp)
LOCALBIN=$HOME/.local/bin
LINUX_OS="other_linux"
trap "abort_install" INT
trap "abort_install" 2 trap "error_exit" HUP QUIT ILL ABRT
trap "error_exit" 1 3 4 6
init_install () { init_install () {
${ECHO} "Installation started on $(date)" > ${LOGFILE} printf "Installation started on %s\n" "$(date)" > "${LOGFILE}"
${ECHO} "0" > ${GETOUTFILE} printf "0" > "${GETOUTFILE}"
get_os
if [ "$BYPASS" = "n" ]; then if [ "$BYPASS" = "n" ]; then
${ECHO} "" printf ""
${ECHO} "This program will install the MsSpec distribution on your computer" printf "This program will install the msspec python package on your system.\n"
${ECHO} -n "Press C^c to cancel now... " printf "It is highly recommended to run this installation process within a\n"
for i in $(seq -s" " 0 $TIMEOUT); do printf "Python virtual environment. If you want to create and/or activate one,\n"
${ECHO} -n "\b"; printf "you can answer \"n\" now and restart the setup program later.\n"
${ECHO} -n $(( $TIMEOUT-i ));
sleep 1; read_yes_no "Do you wish to continue" "y"
done case "${ANSWER}" in
${ECHO} "" y) ;;
n) abort_install ;;
esac
fi fi
} }
abort_install () { abort_install () {
${ECHO} "Installation aborted by the user" >> ${LOGFILE} log_message "Installation aborted by the user"
error_exit error_exit
} }
@ -57,60 +49,41 @@ log_message2 () {
} }
cleanup () { cleanup () {
stty echo rm -rf "${GETOUTFILE}"
rm -rf ${GETOUTFILE}
} }
error_exit () { error_exit () {
# An error occured # An error occured
printf "\n" printf "\n"
printf " /!\ An error occured during the installation process.\n" printf " /!\ An error occured during the installation process.\n"
printf " Please see the $(basename ${LOGFILE}) file in your HOME folder\n" printf " Please see the %s file in your HOME folder\n" "$(basename "${LOGFILE}")"
printf " for more informations.\n" printf " for more informations.\n"
printf " Below is an excerpt of the last 10 lines:\n" printf " Below is an excerpt of the last 10 lines:\n"
printf "\n" printf "\n"
tail -v -n 10 "${LOGFILE}" tail "${LOGFILE}"
# uninstall if needed # uninstall if needed
pip uninstall -y msspec pip uninstall -y msspec
# if the DEST_FOLDER existed before, do NOT delete it
if [ x"$DEST_ALREADY_EXISTS" = "xn" ]; then
rm -rf ${DEST_FOLDER} 2>/dev/null
fi
cleanup && exit 1 cleanup && exit 1
} }
get_os () {
for os in "ubuntu" "mageia" "archlinux"; do
cat /etc/*release /etc/*version /etc/*issue 2>/dev/null | grep -i "$os" 2>/dev/null 1>/dev/null
if test $? -eq 0; then
LINUX_OS="$os"
break
fi
done
}
read_yes_no () { read_yes_no () {
DEFAULT="$2" DEFAULT="$2"
PROMPT="$1 (y/n) [${DEFAULT}]? " PROMPT="$1 (y/n) [${DEFAULT}]? "
ANSWER="" ANSWER=""
RESPONSE="" INPUT=""
VALID=1 VALID=1
while test $VALID -ne 0; do while test $VALID -ne 0; do
printf "${PROMPT}" printf "%s" "${PROMPT}"
if [ x"$BYPASS" = "xn" ]; then if [ x"$BYPASS" = xn ]; then
read "RESPONSE" read -r "INPUT"
else else
printf "\n" printf "\n"
fi fi
ANSWER="${RESPONSE:-${DEFAULT}}" ANSWER="${INPUT:-${DEFAULT}}"
case "${ANSWER}" in case "${ANSWER}" in
y|n) VALID=0 ;; y|n) VALID=0 ;;
*) printf "Invalid choice, please answer \"y\" or \"n\".\n"; VALID=1 ;; *) printf "Invalid choice, please answer \"y\" or \"n\".\n"; VALID=1 ;;
@ -120,57 +93,13 @@ read_yes_no () {
log_message "ANSWER : $ANSWER" log_message "ANSWER : $ANSWER"
} }
read_folder () {
DEFAULT="$2"
PROMPT="$1 [${DEFAULT}]: "
ANSWER=""
unset FOLDER
printf "${PROMPT}"
if [ x"$BYPASS" = "xn" ]; then
read "ANSWER"
else
printf "\n"
fi
export FOLDER="${ANSWER:-$DEFAULT}"
log_message "QUESTION: $PROMPT"
log_message "ANSWER : $FOLDER"
}
create_folder () {
FOLDER="$1"
ERR_MKDIR=1
ERR_ABORT=2
ERR_PERMS=3
if ! test -d "${FOLDER}" ; then
read_yes_no "The folder \"${FOLDER}\" does not exist. Should I create it" "y" #"$BYPASS"
case "${ANSWER}" in
y) mkdir -p "${FOLDER}" 2>>${LOGFILE} 1>>${LOGFILE} || return $ERR_MKDIR;;
n) log_message2 "Installation aborted by the user" && return $ERR_ABORT ;;
esac
fi
if ! test -w "${FOLDER}" ; then
log_message2 "You do not have permission to write into \"${FOLDER}\"."
return $ERR_PERMS
fi
}
wrap () { wrap () {
log_message "================================================================================" log_message "================================================================================"
log_message "$2" log_message "$2"
log_message "================================================================================" log_message "================================================================================"
if [ "$DEBUG" = "y" ]; then if [ "$DEBUG" = y ]; then
eval "($1) 2>&1" | tee -a ${LOGFILE} printf "%s...\n" "$2"
echo ${PIPESTATUS[0]} >${GETOUTFILE} (eval "$1" || echo $? >"${GETOUTFILE}") | tee -a "${LOGFILE}"
rc=$(cat $GETOUTFILE) rc=$(cat $GETOUTFILE)
if [ $rc != 0 ]; then if [ $rc != 0 ]; then
error_exit error_exit
@ -181,60 +110,38 @@ wrap () {
fi fi
} }
update_path () {
# check if the shell path contains $BIN_FOLDER
SHELLRC="$HOME/.$(basename $SHELL)rc"
${ECHO} "$PATH" | grep "${BIN_FOLDER}" 2>/dev/null 1>/dev/null
if test $? -ne 0; then
${ECHO} "" >> $SHELLRC
${ECHO} "# Add the user's local binary folder" >> $SHELLRC
${ECHO} "export PATH=${BIN_FOLDER}:\$PATH" >> $SHELLRC
${ECHO} "Your PATH variable has been updated, the folder"
${ECHO} "${BIN_FOLDER} has been added to it."
${ECHO} ""
${ECHO} "Please source again your shell configuration file by typing:"
${ECHO} "source $SHELLRC"
fi
}
success_message () { success_message () {
log_message "========================================================" log_message "========================================================"
log_message "MsSpec was successfully installed." log_message "MsSpec was successfully installed."
log_message "========================================================" log_message "========================================================"
} }
patience () { patience () {
MSG=$1 MSG="$1"
PID=$! PID=$!
i=0 i=0
${ECHO} -n "$MSG... " printf "%s" "$MSG... "
while ps -p $PID > /dev/null while ps -p $PID > /dev/null
do do
sleep 0.1 sleep 0.1
case $i in case $i in
0) ${ECHO} -n "\b\b- " ;; 0) printf "\b\b- " ;;
1) ${ECHO} -n "\b\b\\ " ;; 1) printf "\b\b\\ " ;;
2) ${ECHO} -n "\b\b| " ;; 2) printf "\b\b| " ;;
3) ${ECHO} -n "\b\b/ "; i=-1 ;; 3) printf "\b\b/ "; i=-1 ;;
esac esac
i=$((i+1)) i=$(( i+1 ))
done done
if test $(cat ${GETOUTFILE}) -ne 0; then if test "$(cat "${GETOUTFILE}")" -ne 0; then
${ECHO} "\b\b Aborted!" printf "\b\b Aborted!"
error_exit error_exit
fi fi
${ECHO} "\b\b Done." printf "\b\b Done.\n"
} }
show_help () { show_help () {
echo "Usage: $SCRIPT_NAME [OPTIONS]" echo "Usage: $SCRIPT_NAME [OPTIONS]"
echo "List of possible options:" echo "List of possible options:"
echo " -p FOLDER Default FOLDER for installation."
echo " -b FOLDER Default FOLDER for binaries."
echo " -y Accept all default choices." echo " -y Accept all default choices."
echo " -d Debug mode." echo " -d Debug mode."
echo " -h Show this message." echo " -h Show this message."
@ -254,7 +161,7 @@ check_dependencies () {
command -V gfortran || return 1 command -V gfortran || return 1
gcc_ver=$(gcc -dumpversion) gcc_ver=$(gcc -dumpversion)
echo "You have gfortran version $gcc_ver installed" echo "You have gfortran version $gcc_ver installed"
test $gcc_ver -ge $gcc_ver_min || return 1 test "$gcc_ver" -ge "$gcc_ver_min" || return 1
log_message "Ok\n" log_message "Ok\n"
# we need libcairo and dev files # we need libcairo and dev files
@ -266,20 +173,19 @@ check_dependencies () {
py_ver_major_min=3 py_ver_major_min=3
py_ver_minor_min=0 py_ver_minor_min=0
log_message "Checking if Python >= ${py_ver_major_min}.${py_ver_minor_min}..." log_message "Checking if Python >= ${py_ver_major_min}.${py_ver_minor_min}..."
message="You need Python version ${py_ver_major_min}.${py_ver_minor_min}" command -V python || return 1
python --version|cut -d" " -f2 || return 1
py_ver=$(python --version | cut -d" " -f2) py_ver=$(python --version | cut -d" " -f2)
echo "You have Python version $py_ver installed" echo "You have Python version $py_ver installed"
py_ver_major=$(echo $py_ver|cut -d. -f1) py_ver_major=$(echo $py_ver|cut -d. -f1)
py_ver_minor=$(echo $py_ver|cut -d. -f2) py_ver_minor=$(echo $py_ver|cut -d. -f2)
test $py_ver_major -ge $py_ver_major_min || return 1 test "$py_ver_major" -ge "$py_ver_major_min" || return 1
test $py_ver_minor -ge $py_ver_minor_min || return 1 test "$py_ver_minor" -ge "$py_ver_minor_min" || return 1
log_message "Ok\n" log_message "Ok\n"
# we need virtualenv # we need virtualenv
log_message "Checking if virtualenv is installed..." #log_message "Checking if virtualenv is installed..."
command -V virtualenv || return 1 #command -V virtualenv || return 1
log_message "Ok\n" #log_message "Ok\n"
} }
@ -290,91 +196,24 @@ local_install () {
# check dependencies # check dependencies
wrap "check_dependencies" "Checking dependencies" wrap "check_dependencies" "Checking dependencies"
# ask for a place to put the binary # build the Fortran code
#read_folder "Please, type in the folder where to place the binary" "${DEFAULT_BIN}" wrap "make pybinding VERBOSE=1" "Building Phagen and Spec Python dynamic library"
#BIN_FOLDER=${FOLDER}
#create_folder "${BIN_FOLDER}" || error_exit
#export BIN_FOLDER
# If in a virtualenv, ask if we should install inside # build the source distribution
if [ x"$VIRTUAL_ENV" != x ]; then wrap "make sdist VERBOSE=1" "Building msspec python package"
read_yes_no "You are running a Python virtual environment. Do you wish to install msspec inside ?" "y"
case ${ANSWER} in
y) # get the python version of this venv...
v=$(python -V 2>&1 | cut -d" " -f2 | cut -d. -f1)
# and stops if < 3
if [ $v -lt 3 ]; then
log_message "The Python version of this venv is < 3"
error_exit
fi
;;
n) # The user decided to stop there
log_message "Please deactivate your virtual environment and restart the setup program."
error_exit
;;
esac
# Else, we are not in a virtualenv
else
pip_opt=""
# so ask if we should create one
read_yes_no "Do you wish to create a virtual environment to install MsSpec inside" "y"
case ${ANSWER} in
y) # Create the destination folder
read_folder "Please, type in the base installation folder" "${DEFAULT_DEST}"
DEST_FOLDER=${FOLDER}/MsSpec-${VERSION}
if [ -d $DEST_FOLDER ]; then
export DEST_ALREADY_EXISTS="y" # to avoid cleaning the existing DEST_FOLDER in case of any problem
read_yes_no "The folder $DEST_FOLDER already exists. Overwrite" "y"
case ${ANSWER} in
y) # overwrite
create_folder "${DEST_FOLDER}" || error_exit
;;
n) # stop here otherwise
error_exit
;;
esac
fi
export DEST_FOLDER
wrap "virtualenv -vvv --python=${PYTHON} --system-site-packages --prompt=\"(msspec-${VERSION}) \" ${DEST_FOLDER}/venv" \
"Create a Python virtual environment"
. ${DEST_FOLDER}/venv/bin/activate
;;
n) # install in the user $HOME
pip_opt="--user"
;;
esac
fi
# build and run setuptools to create a source distribution # install the package
wrap "make sdist" \ wrap "make install VERBOSE=1" "Installing the msspec package"
"Building MsSpec python package"
# install the package with pip
wrap "pip install $pip_opt dist/msspec-*.tar.gz" \
"Installing pymsspec python package and its dependencies"
#
## move the frontend to the binary folder
##wrap "mkdir -p ${LOCALBIN} && \
## cp ./msspec ${LOCALBIN} && chmod u+x ${LOCALBIN}/msspec && \
## ${ECHO} \"msspec installed in ${LOCALBIN}\"" \
## "Installing the msspec frontend"
# "cp ./msspec ${BIN_FOLDER} && chmod ugo+rx ${BIN_FOLDER}/msspec" "Installing the msspec frontend"
#
## move the uninstal script
#wrap "cp ./uninstall.sh ${DEST}" "Moving the uninstall script"
#
# Run unit tests ? # Run unit tests ?
read_yes_no "Do you wish to run unit tests (${LOGFILE})" "y" read_yes_no "Do you wish to run unit tests" "y"
if [ x"${ANSWER}" = "xy" ]; then if [ x"${ANSWER}" = xy ]; then
wrap "python -c \"from msspec.tests import run_tests; run_tests()\"" \ wrap "make tests" "Runing test suite"
"Runing test suite"
fi fi
# installation was a succes so ask if we keep the log file # installation was a succes so ask if we keep the log file
read_yes_no "Do you wish to keep the log file (${LOGFILE})" "n" read_yes_no "Do you wish to keep the log file (${LOGFILE})" "n"
if [ x"${ANSWER}" = "xn" ]; then if [ x"${ANSWER}" = xn ]; then
rm -f "${LOGFILE}" rm -f "${LOGFILE}"
fi fi
@ -382,15 +221,9 @@ local_install () {
success_message success_message
} }
while getopts "p:b:yd" option while getopts "p:b:yd" option
do do
case $option in case $option in
p) export DEFAULT_DEST="$OPTARG"
;;
b) export DEFAULT_BIN="$OPTARG"
;;
y) export BYPASS="y" y) export BYPASS="y"
;; ;;
d) export DEBUG="y" d) export DEBUG="y"
@ -402,7 +235,4 @@ do
esac esac
done done
local_install local_install

30
src/msspec/phagen/fortran/Makefile
View File

@ -1,31 +1,35 @@
COMP=gfortran COMP=gfortran
OPTS := -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan F2PY:=f2py3
OPTs :=
COMP_OPTS:= -O2 -ffast-math
F2PY_OPTS:=
DEBUG:=0
objects_src := phagen_scf.f objects_src := phagen_scf.f
objects := $(patsubst %.f,%.o, $(objects_src)) objects := $(patsubst %.f,%.o, $(objects_src))
ifeq ($(DEBUG),1)
COMP_OPTS:=$(COMP_OPTS) -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan
F2PY_OPTS:=$(F2PY_OPTS) --debug-capi --debug
endif
.PHONY: clean purge pybinding
.PHONY: clean
pybinding: libphagen.so pybinding: libphagen.so
libphagen.so: $(objects) main.f libphagen.so: $(objects) main.f
@echo "building Python binding..." @echo "building Python binding..."
@f2py3 -I. $(objects) -c -m libphagen main.f @$(F2PY) -I. $(objects) $(F2PY_OPTS)-c -m libphagen main.f
#f2py3 -I. $(objects) --debug-capi --debug -c -m libphagen main.f
@cp libphagen.cpython*.so ../ @cp libphagen.cpython*.so ../
@mv libphagen.cpython*.so libphagen.so @mv libphagen.cpython*.so libphagen.so
$(objects): $(objects_src) $(objects): $(objects_src)
@echo "compiling subroutines and functions..." @echo "compiling subroutines and functions for phagen..."
@$(COMP) $(OPTS) -fPIC -c $^ @$(COMP) $(COMP_OPTS) -fPIC -c $^
clean: clean:
@echo "cleaning..." @echo "cleaning..."
rm -rf *.so *.o *.mod @rm -rf *.so *.o *.mod
@rm -rf ../*.so
purge: clean
@echo "Purging..."
rm -rf ../*.so

32
src/msspec/spec/fortran/Makefile
View File

@ -1,21 +1,30 @@
COMP=gfortran COMP:=gfortran
F2PY:=f2py3
COMP_OPTS:= -O2 -ffast-math
F2PY_OPTS:=
DEBUG:=0
objects_src := dim_mod.f modules.f renormalization.f allocation.f spec.f objects_src := dim_mod.f modules.f renormalization.f allocation.f spec.f
objects := $(patsubst %.f,%.o, $(objects_src)) objects := $(patsubst %.f,%.o, $(objects_src))
OPTS := -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan
EXE=prog EXE=prog
ifeq ($(DEBUG),1)
COMP_OPTS:=$(COMP_OPTS) -g -Wall -Wextra -Warray-temporaries -Wconversion -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan
F2PY_OPTS:=$(F2PY_OPTS) --debug-capi --debug
endif
.PHONY: clean purge pybinding
.PHONY: clean
pybinding: libspec.so pybinding: libspec.so
libspec.so: $(objects) main.f libspec.so: $(objects) main.f
@echo "building Python binding..." @echo "building Python binding..."
#@f2py3 -I. $(objects) -c -m libspec main.f @$(F2PY) -I. $(objects) $(F2PY_OPTS) -c -m libspec main.f
@f2py3 -I. $(objects) --debug-capi --debug -c -m libspec main.f
@cp libspec.cpython*.so ../ @cp libspec.cpython*.so ../
@mv libspec.cpython*.so libspec.so @mv libspec.cpython*.so libspec.so
@ -26,16 +35,13 @@ exe: $(objects) prog.f
$(objects): $(objects_src) $(objects): $(objects_src)
@echo "compiling subroutines and functions..." @echo "compiling subroutines and functions for spec..."
#$(COMP) -cpp -fPIC -O2 -ffast-math -mcmodel=large -fdefault-real-4 -c $^ # $(COMP) -cpp -fPIC -O2 -ffast-math -mcmodel=large -fdefault-real-4 -c $^
#@$(COMP) $(OPTS) -fPIC -mcmodel=large -c $^ # @$(COMP) $(OPTS) -fPIC -mcmodel=large -c $^
@$(COMP) $(OPTS) -fPIC -c $^ @$(COMP) $(COMP_OPTS) -fPIC -c $^
clean: clean:
@echo "cleaning..." @echo "cleaning..."
@rm -rf *.so *.o *.mod @rm -rf *.so *.o *.mod
purge: clean
@echo "Purging..."
@rm -rf $(EXE) @rm -rf $(EXE)
@rm -rf ../*.so @rm -rf ../*.so