Add test coverage report in documentation
Now tests are run through the coverage utility and a report is generated and available in the FAQ of the html doc.
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2
Makefile
2
Makefile
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@ -61,7 +61,7 @@ clean:
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venv:
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@virtualenv --python=python3 --system-site-packages ci_venv $(SUPPRESS_OUPUT)
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@. "./ci_venv/bin/activate" && pip install --upgrade pip numpy ase h5py lxml pint terminaltables pycairo sphinx $(SUPPRESS_OUPUT)
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@. "./ci_venv/bin/activate" && pip install --upgrade pip numpy ase h5py lxml pint terminaltables pycairo sphinx coverage $(SUPPRESS_OUPUT)
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doc:
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@echo "Building pdf and html documentation..."
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@ -3,7 +3,7 @@
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# You can set these variables from the command line.
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SPHINXOPTS =
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SPHINXBUILD = python -m sphinx
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SPHINXBUILD = sphinx-build
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PAPER =
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BUILDDIR = build
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@ -83,9 +83,13 @@ html0: banner images
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@echo
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@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
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html: html0 ownership $(BUILDDIR)/html/sitemap.xml
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html: html0 ownership $(BUILDDIR)/html/sitemap.xml coverage_report
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@echo
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coverage_report:
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@echo "Generating coverage report..."
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@mv source/htmlcov $(BUILDDIR)/html/_static
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dirhtml:
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$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
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@echo
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@ -20,6 +20,8 @@ import sys, os
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sys.path.insert(0, os.path.abspath('.'))
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sys.path.insert(0, os.path.abspath('../src'))
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sys.path.insert(0, os.path.abspath('../src/msspec'))
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sys.path.insert(0, os.path.abspath('../../src'))
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sys.path.insert(0, os.path.abspath('../../src/msspec'))
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#sys.path.insert(0, os.path.abspath('../'))
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@ -0,0 +1,8 @@
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.. _coverage_report_faq:
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Test coverage
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-------------
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.. raw:: html
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<iframe src="../../_static/htmlcov/index.html" height="600px" width="100%"></iframe>
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@ -7,3 +7,4 @@ FAQ
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.. toctree::
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hemispherical_cluster/hemispherical_cluster
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coverage_report/coverage_report
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@ -27,7 +27,12 @@ results: pybinding
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tests: pybinding
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@echo "Runing unittests"
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@python -c "from msspec.tests import run_tests; run_tests()" 1>/dev/null
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# @python -c "from msspec.tests import run_tests; run_tests()" 1>/dev/null
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@coverage run --source=./ --omit=msspec/es/*,msspec/msspecgui/* msspec/tests.py 1>/dev/null
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# create the html coverage report
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# @mv .coverage ../doc/source
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@coverage html -d ../doc/source/htmlcov
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@rm .coverage
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clean:
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@echo "Cleaning all..."
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@ -24,7 +24,7 @@ def Apollonius_CCC(circles_data) :
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rmin=min(circles_data[1])
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nbmin=circles_data[1].count(rmin)#So it is the number of circles with the smallest radius
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if nbmin==1 : #then we have 1 little circle, we go to Apollonius CCP
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pass
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elif nbmin==2: #then we have 2 little circles, we go to Apollonius CPP
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if r1!=rmin :
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data=[[O1,r1],O2,O3]
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@ -54,16 +54,16 @@ def compare_sym(Nsym,Osym):
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print("New number of sym :", N)
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if N>O :
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output=2
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print "Symmetries gained. Symmetry-list updated"
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print("Symmetries gained. Symmetry-list updated")
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elif O==1 :
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output=-1
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print "No symmetry existing to help at decision"
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print("No symmetry existing to help at decision")
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elif N == O:
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output=1
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print "Symmetry has been conserved."
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print("Symmetry has been conserved.")
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elif N<O :
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output=0
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print "Symmetries Lost: Fusion-Operation on last empty-spheres advised"
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print("Symmetries Lost: Fusion-Operation on last empty-spheres advised")
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return output
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# ===================================================================
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def read_sym_file(symfile) :
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@ -279,7 +279,7 @@ def Cluster_emptyness_informations(Structure) :
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raw_input("\nPress Enter to continue ...\n")
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Allproportions.append(proportion)
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print "AllProportions : ",Allproportions
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print("AllProportions : ",Allproportions)
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print("Hull volume = {}".format(set_volume))
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return spheres_volume / set_volume * 100
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@ -341,7 +341,7 @@ def Vertice_Sphere_Proportion(O,hull,Structure) :
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V1 = tool.vector_def(Point_list[O], P1)
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V2 = tool.vector_def(Point_list[O], P2)
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V3 = tool.vector_def(Point_list[O], P3)
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print "Vectors from top of pyramid to base points" , [V1, V2, V3]
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print("Vectors from top of pyramid to base points" , [V1, V2, V3])
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a = tool.angle_vector(V1, V2)
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b = tool.angle_vector(V2, V3)
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c = tool.angle_vector(V3, V1)
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@ -430,7 +430,7 @@ def convex_base(Neil,Simplices) :
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Last=ConvBase[-1]
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print(Last)
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Neighborsi=hull_search_neighbors(i,Simplices)
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print ("The last elements :{}\nHis neighbors : {}".format(ConvBase[-1],Neighborsi))
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print("The last elements :{}\nHis neighbors : {}".format(ConvBase[-1],Neighborsi))
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if ConvBase[-1] in Neighborsi :
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ConvBase.append(i)
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Rest.remove(i)
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@ -459,7 +459,7 @@ def Hull_Neighbors_List(O,Structure,hull) :
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# Returns the list of all atom's indexes in hull wich are neighbors of Atom indexed numAtom (numAtom must be int, 0 included)
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Allfacets = np.ndarray.tolist(hull.simplices)
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Hull_Neilist = []
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print Allfacets
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print(Allfacets)
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for facet in Allfacets :
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if O in facet :
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for index in facet :
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@ -179,9 +179,9 @@ class BulkGui(dataflow.IOperatorCreator.IAction):
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if result == wx.ID_OK:
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print("execute_on_operator : signaling operator %d as modified" % operator.id)
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operator.data_flow.on_modified_operator(operator)
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print "OK"
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print("OK")
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else:
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print "Cancel"
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print("Cancel")
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dialog.Destroy()
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@ -65,7 +65,7 @@ class GLPanel(wx.Panel):
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else:
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self.scale /= 1.1
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#self._gl_scale()
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print self.scale
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print(self.scale)
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w, h = self.canvas.GetClientSize()
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self._gl_init_view(w, h)
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self._gl_draw()
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@ -82,7 +82,7 @@ class GLPanel(wx.Panel):
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winz = glReadPixels(winx, winy, 1, 1, GL_DEPTH_COMPONENT, GL_FLOAT)[0][0]
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coords = gluUnProject(winx, winy, winz, mvmatrix, projmatrix, viewport)
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self.coords0 = coords
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print "coords0 = ", coords
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print("coords0 = ", coords)
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def onMotionEvent(self, event):
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@ -112,10 +112,10 @@ class GLPanel(wx.Panel):
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translation = [x - self.coords0[0], y - self.coords0[1], 0]
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#print x, y, z#translation
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if winx < w and winx > 0 and winy < h and winy > 0:
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print 'here'
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print('here')
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glTranslatef(*translation)
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#self.translation = translation
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print translation
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print(translation)
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self._gl_draw()
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@ -151,3 +151,7 @@ def create_tests_results():
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def delete_results_file():
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os.remove(RESULTS_FILENAME)
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if __name__ == "__main__":
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run_tests()
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