2020-06-04 14:37:01 +02:00
|
|
|
|
#!/bin/sh
|
|
|
|
|
|
|
|
|
|
# This script will check if any APT upgrade is available and
|
|
|
|
|
# will prepare the host in order to apply upgrade with another script
|
2020-06-18 08:45:28 +02:00
|
|
|
|
# 1. Create a temp file
|
|
|
|
|
# 2. Disable SGE queue
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
|
|
|
|
# This script can be call by a cronjob (eg. weekly)
|
|
|
|
|
# Another script should try to apply upgrades also with cron (eg. hourly)
|
|
|
|
|
|
|
|
|
|
# Vars {{{
|
|
|
|
|
readonly PROGNAME=$(basename "${0}")
|
|
|
|
|
readonly PROGDIR=$(readlink -m $(dirname "${0}"))
|
|
|
|
|
readonly ARGS="${*}"
|
|
|
|
|
readonly NBARGS="${#}"
|
2020-09-24 15:18:09 +02:00
|
|
|
|
[ -z "${DEBUG}" ] && DEBUG=1
|
2020-06-04 14:37:01 +02:00
|
|
|
|
## Export DEBUG for sub-script
|
|
|
|
|
export DEBUG
|
|
|
|
|
|
2020-06-18 08:45:28 +02:00
|
|
|
|
readonly APT_TMP_FILE="/tmp/.apt.upgrade"
|
|
|
|
|
|
2020-06-04 14:37:01 +02:00
|
|
|
|
## Colors
|
|
|
|
|
readonly PURPLE='\033[1;35m'
|
|
|
|
|
readonly RED='\033[0;31m'
|
|
|
|
|
readonly RESET='\033[0m'
|
|
|
|
|
readonly COLOR_DEBUG="${PURPLE}"
|
|
|
|
|
# }}}
|
|
|
|
|
|
|
|
|
|
usage() { # {{{
|
|
|
|
|
|
|
|
|
|
cat <<- EOF
|
|
|
|
|
usage: $PROGNAME
|
|
|
|
|
|
|
|
|
|
Verify if any APT package upgrade is available and
|
|
|
|
|
try to prepare the host by :
|
|
|
|
|
* Disabling SGE queue
|
|
|
|
|
|
|
|
|
|
EXAMPLES :
|
|
|
|
|
- Verify upgrade and prepare the current host
|
|
|
|
|
${PROGNAME}
|
2020-09-24 15:18:09 +02:00
|
|
|
|
|
|
|
|
|
OPTIONS :
|
|
|
|
|
-d,--debug
|
|
|
|
|
Enable debug messages.
|
|
|
|
|
|
|
|
|
|
-h,--help
|
|
|
|
|
Print this help message.
|
2020-06-04 14:37:01 +02:00
|
|
|
|
EOF
|
|
|
|
|
|
|
|
|
|
}
|
|
|
|
|
# }}}
|
|
|
|
|
debug_message() { # {{{
|
|
|
|
|
|
|
|
|
|
local_message="${1}"
|
|
|
|
|
|
|
|
|
|
## Print message if DEBUG is enable (=0)
|
|
|
|
|
[ "${DEBUG}" -eq "0" ] && printf '\e[1;35m%-6b\e[m\n' "DEBUG − ${PROGNAME} : ${local_message}"
|
|
|
|
|
|
2020-08-20 10:02:11 +02:00
|
|
|
|
return 0
|
2020-06-04 14:37:01 +02:00
|
|
|
|
}
|
|
|
|
|
# }}}
|
2020-09-24 15:44:01 +02:00
|
|
|
|
define_vars() { # {{{
|
|
|
|
|
|
|
|
|
|
## If sge_hostname wasn't defined
|
|
|
|
|
if [ -z "${sge_hostname}" ]; then
|
|
|
|
|
## Use local host for sge_hostname
|
|
|
|
|
sge_hostname="$(hostname -f)"
|
|
|
|
|
fi
|
|
|
|
|
|
|
|
|
|
}
|
|
|
|
|
# }}}
|
2020-06-15 13:49:25 +02:00
|
|
|
|
is_apt_upgrade_absent() { # {{{
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
|
|
|
|
## Count the number of upgradable packages and substract 1 for the header
|
2020-06-25 08:50:17 +02:00
|
|
|
|
local_apt_upgrade_number="$(apt list --upgradable 2>/dev/null \
|
2020-06-04 16:52:10 +02:00
|
|
|
|
| wc -l \
|
|
|
|
|
| awk '{print $1-1}')"
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
|
|
|
|
case "${local_apt_upgrade_number}" in
|
|
|
|
|
0 ) ## No available upgrade
|
|
|
|
|
return_apt_upgrade_absent="0"
|
|
|
|
|
;;
|
|
|
|
|
* ) ## Upgrade seems available
|
|
|
|
|
return_apt_upgrade_absent="1"
|
|
|
|
|
;;
|
|
|
|
|
esac
|
|
|
|
|
|
|
|
|
|
## Simple debug message to valid current variable
|
|
|
|
|
debug_message "is_apt_upgrade_absent − \
|
|
|
|
|
APT upgrade available for this system: ${RED}${local_apt_upgrade_number:=/dev/null}${COLOR_DEBUG}."
|
|
|
|
|
|
|
|
|
|
return "${return_apt_upgrade_absent}"
|
|
|
|
|
|
|
|
|
|
}
|
|
|
|
|
# }}}
|
2020-06-15 13:49:25 +02:00
|
|
|
|
is_apt_upgrade_present() { # {{{
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
|
|
|
|
## Count the number of upgradable packages and substract 1 for the header
|
2020-06-25 08:50:17 +02:00
|
|
|
|
local_apt_upgrade_number="$(apt list --upgradable 2>/dev/null \
|
2020-06-04 16:52:10 +02:00
|
|
|
|
| wc -l \
|
|
|
|
|
| awk '{print $1-1}')"
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
|
|
|
|
case "${local_apt_upgrade_number}" in
|
|
|
|
|
0 ) ## No available upgrade
|
|
|
|
|
return_apt_upgrade_present="1"
|
|
|
|
|
;;
|
|
|
|
|
* ) ## Upgrade seems available
|
|
|
|
|
return_apt_upgrade_present="0"
|
|
|
|
|
;;
|
|
|
|
|
esac
|
|
|
|
|
|
|
|
|
|
## Simple debug message to valid current variable
|
|
|
|
|
debug_message "is_apt_upgrade_present − \
|
|
|
|
|
APT upgrade available for this system: ${RED}${local_apt_upgrade_number:=/dev/null}${COLOR_DEBUG}."
|
|
|
|
|
|
|
|
|
|
return "${return_apt_upgrade_present}"
|
|
|
|
|
|
2020-09-24 15:44:01 +02:00
|
|
|
|
}
|
|
|
|
|
# }}}
|
|
|
|
|
is_sge_slots_more_than_percentage() { # {{{
|
|
|
|
|
|
|
|
|
|
local_percentage="${1}"
|
|
|
|
|
|
|
|
|
|
## Get the number of total SGE slots
|
|
|
|
|
local_sge_slots=$(qhost -h "${sge_hostname:=/dev/null}" -q -xml \
|
|
|
|
|
| grep --max-count=1 -- "'slots'" \
|
|
|
|
|
| sed 's;.*<queuevalue.*>\(.*\)</queuevalue>;\1;')
|
|
|
|
|
|
|
|
|
|
## Get the expected percentage of total SGE slots
|
|
|
|
|
local_sge_slots_percentage=$(echo "${local_sge_slots}" \
|
|
|
|
|
| awk -v percentage="0.${local_percentage}" '{ print int($1 * percentage) }')
|
|
|
|
|
|
|
|
|
|
## Get the number of SGE used slots
|
|
|
|
|
local_sge_slots_used=$(qhost -h "${sge_hostname:=/dev/null}" -q -xml \
|
|
|
|
|
| grep --max-count=1 -- "'slots_used'" \
|
|
|
|
|
| sed 's;.*<queuevalue.*>\(.*\)</queuevalue>;\1;')
|
|
|
|
|
|
|
|
|
|
if [ "${local_sge_slots_used}" -ge "${local_sge_slots_percentage}" ]; then
|
|
|
|
|
## Used slots is greater or equal than expected percentage
|
|
|
|
|
return_sge_slots_percentage="0"
|
|
|
|
|
## Simple debug message to valid current variable
|
|
|
|
|
debug_message "is_sge_slots_more_than_percentage (${local_percentage}%) − \
|
|
|
|
|
Used slots has reached ${local_percentage}% of total slots: ${RED}${local_sge_slots_used:=/dev/null}${COLOR_DEBUG}/${local_sge_slots}."
|
|
|
|
|
else
|
|
|
|
|
return_sge_slots_percentage="1"
|
|
|
|
|
## Simple debug message to valid current variable
|
|
|
|
|
debug_message "is_sge_slots_more_than_percentage (${local_percentage}%) − \
|
|
|
|
|
Used slots did not reach ${local_percentage}% of total slots: ${RED}${local_sge_slots_used:=/dev/null}${COLOR_DEBUG}/${local_sge_slots}."
|
|
|
|
|
fi
|
|
|
|
|
|
|
|
|
|
return "${return_sge_slots_percentage}"
|
|
|
|
|
|
2020-09-25 11:36:12 +02:00
|
|
|
|
}
|
|
|
|
|
# }}}
|
|
|
|
|
is_sge_slots_empty() { # {{{
|
|
|
|
|
|
|
|
|
|
## Get the number of SGE used slots
|
|
|
|
|
local_sge_slots_used=$(qhost -h "${sge_hostname:=/dev/null}" -q -xml \
|
|
|
|
|
| grep --max-count=1 -- "'slots_used'" \
|
|
|
|
|
| sed 's;.*<queuevalue.*>\(.*\)</queuevalue>;\1;')
|
|
|
|
|
|
|
|
|
|
if [ "${local_sge_slots_used}" -eq "0" ]; then
|
|
|
|
|
## Used slots is null
|
|
|
|
|
return_sge_slots_empty="0"
|
|
|
|
|
else
|
|
|
|
|
return_sge_slots_empty="1"
|
|
|
|
|
fi
|
|
|
|
|
|
|
|
|
|
## Simple debug message to valid current variable
|
|
|
|
|
debug_message "is_sge_slots_empty − \
|
|
|
|
|
SGE slots currently in use: ${RED}${local_sge_slots_used:=/dev/null}${COLOR_DEBUG}."
|
|
|
|
|
|
|
|
|
|
return "${return_sge_slots_empty}"
|
|
|
|
|
|
2020-09-24 14:56:27 +02:00
|
|
|
|
}
|
|
|
|
|
# }}}
|
|
|
|
|
is_pending_job_empty() { # {{{
|
|
|
|
|
|
|
|
|
|
## Count the number of pending jobs (qw state only)
|
|
|
|
|
## Excluding root's jobs
|
|
|
|
|
local_pending_jobs="$(qstat -s p -u '*' \
|
|
|
|
|
| grep --count --perl-regexp -- "(?=.*?\bqw\b)((?!root).)*$")"
|
|
|
|
|
|
|
|
|
|
case "${local_pending_jobs}" in
|
|
|
|
|
0 ) ## Pending jobs list is empty
|
|
|
|
|
return_pending_job_empty="0"
|
|
|
|
|
;;
|
|
|
|
|
* ) ## Some jobs are waiting
|
|
|
|
|
return_pending_job_empty="1"
|
|
|
|
|
;;
|
|
|
|
|
esac
|
|
|
|
|
|
|
|
|
|
## Simple debug message to valid current variable
|
|
|
|
|
debug_message "is_pending_job_empty − \
|
|
|
|
|
Pending jobs for the compute cluster: ${RED}${local_pending_jobs:=/dev/null}${COLOR_DEBUG}."
|
|
|
|
|
|
|
|
|
|
return "${return_pending_job_empty}"
|
|
|
|
|
|
2020-06-04 14:37:01 +02:00
|
|
|
|
}
|
|
|
|
|
# }}}
|
|
|
|
|
main() { # {{{
|
|
|
|
|
|
2020-09-24 15:44:01 +02:00
|
|
|
|
## Define all vars
|
|
|
|
|
define_vars
|
|
|
|
|
|
2020-06-22 11:25:11 +02:00
|
|
|
|
sge_disable_host_queue_script="${PROGDIR}/sge.disable.host.queue.sh"
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
2020-09-24 14:56:27 +02:00
|
|
|
|
## If NO APT package upgrade is available {{{
|
2020-06-18 08:45:28 +02:00
|
|
|
|
### Ensure to remove any temp file related to APT upgrades
|
2020-06-04 14:37:01 +02:00
|
|
|
|
### Exit
|
|
|
|
|
is_apt_upgrade_absent \
|
2020-06-18 08:45:28 +02:00
|
|
|
|
&& rm -f -- "${APT_TMP_FILE}" \
|
2020-06-04 14:37:01 +02:00
|
|
|
|
&& exit 0
|
2020-09-24 14:56:27 +02:00
|
|
|
|
## }}}
|
|
|
|
|
|
2020-09-24 15:44:01 +02:00
|
|
|
|
## If SGE used slots is more than 75% of total slots AND {{{
|
|
|
|
|
## APT package upgrade is available
|
|
|
|
|
### Create a temp file
|
|
|
|
|
### Disable SGE queue
|
|
|
|
|
is_sge_slots_more_than_percentage "75" \
|
|
|
|
|
&& is_apt_upgrade_present \
|
|
|
|
|
&& touch "${APT_TMP_FILE}" && echo "APT upgrade is available." >> "${APT_TMP_FILE}" \
|
|
|
|
|
&& sh "${sge_disable_host_queue_script}" \
|
|
|
|
|
&& exit 0
|
|
|
|
|
## }}}
|
|
|
|
|
|
2020-09-25 11:36:12 +02:00
|
|
|
|
## If SGE used slots is NULL AND {{{
|
|
|
|
|
## APT package upgrade is available
|
|
|
|
|
### Create a temp file
|
|
|
|
|
### Disable SGE queue
|
|
|
|
|
is_sge_slots_empty \
|
|
|
|
|
&& is_apt_upgrade_present \
|
|
|
|
|
&& touch "${APT_TMP_FILE}" && echo "APT upgrade is available." >> "${APT_TMP_FILE}" \
|
|
|
|
|
&& sh "${sge_disable_host_queue_script}" \
|
|
|
|
|
&& exit 0
|
|
|
|
|
## }}}
|
|
|
|
|
|
2020-09-24 14:56:27 +02:00
|
|
|
|
## If pending job list is empty AND {{{
|
|
|
|
|
## APT package upgrade is available
|
|
|
|
|
### Create a temp file
|
|
|
|
|
### Disable SGE queue
|
|
|
|
|
is_pending_job_empty \
|
|
|
|
|
&& is_apt_upgrade_present \
|
|
|
|
|
&& touch "${APT_TMP_FILE}" && echo "APT upgrade is available." >> "${APT_TMP_FILE}" \
|
|
|
|
|
&& sh "${sge_disable_host_queue_script}" \
|
|
|
|
|
&& exit 0
|
|
|
|
|
## }}}
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
2020-09-24 14:56:27 +02:00
|
|
|
|
## If APT package upgrade is available {{{
|
2020-06-18 08:45:28 +02:00
|
|
|
|
### Create a temp file
|
2020-06-04 14:37:01 +02:00
|
|
|
|
### Disable SGE queue
|
|
|
|
|
is_apt_upgrade_present \
|
2020-06-18 08:45:28 +02:00
|
|
|
|
&& touch "${APT_TMP_FILE}" && echo "APT upgrade is available." >> "${APT_TMP_FILE}" \
|
2020-06-22 11:25:11 +02:00
|
|
|
|
&& sh "${sge_disable_host_queue_script}" \
|
2020-06-15 13:49:25 +02:00
|
|
|
|
&& exit 0
|
2020-09-24 14:56:27 +02:00
|
|
|
|
## }}}
|
2020-06-04 14:37:01 +02:00
|
|
|
|
|
|
|
|
|
}
|
|
|
|
|
# }}}
|
|
|
|
|
|
2020-09-24 15:18:09 +02:00
|
|
|
|
# Manage arguments # {{{
|
|
|
|
|
# This code can't be in a function due to arguments
|
|
|
|
|
|
|
|
|
|
if [ ! "${NBARGS}" -eq "0" ]; then
|
|
|
|
|
|
|
|
|
|
manage_arg="0"
|
|
|
|
|
|
|
|
|
|
## If the first argument is not an option
|
|
|
|
|
if ! printf -- '%s' "${1}" | grep -q -E -- "^-+";
|
|
|
|
|
then
|
|
|
|
|
## Print help message and exit
|
|
|
|
|
printf '%b\n' "${RED}Invalid option: ${1}${RESET}"
|
|
|
|
|
printf '%b\n' "---"
|
|
|
|
|
usage
|
|
|
|
|
|
|
|
|
|
exit 1
|
|
|
|
|
fi
|
|
|
|
|
|
|
|
|
|
# Parse all options (start with a "-") one by one
|
|
|
|
|
while printf -- '%s' "${1}" | grep -q -E -- "^-+"; do
|
|
|
|
|
|
|
|
|
|
case "${1}" in
|
|
|
|
|
-d|--debug ) ## debug
|
|
|
|
|
DEBUG=0
|
|
|
|
|
;;
|
|
|
|
|
-h|--help ) ## help
|
|
|
|
|
usage
|
|
|
|
|
## Exit after help informations
|
|
|
|
|
exit 0
|
|
|
|
|
;;
|
|
|
|
|
* ) ## unknow option
|
|
|
|
|
printf '%b\n' "${RED}Invalid option: ${1}${RESET}"
|
|
|
|
|
printf '%b\n' "---"
|
|
|
|
|
usage
|
|
|
|
|
exit 1
|
|
|
|
|
;;
|
|
|
|
|
esac
|
|
|
|
|
|
|
|
|
|
debug_message "Arguments management − \
|
|
|
|
|
${RED}${1}${COLOR_DEBUG} option managed."
|
|
|
|
|
|
|
|
|
|
## Move to the next argument
|
|
|
|
|
shift
|
|
|
|
|
manage_arg=$((manage_arg+1))
|
|
|
|
|
|
|
|
|
|
done
|
|
|
|
|
|
|
|
|
|
debug_message "Arguments management − \
|
|
|
|
|
${RED}${manage_arg}${COLOR_DEBUG} argument(s) successfully managed."
|
|
|
|
|
else
|
|
|
|
|
debug_message "Arguments management − \
|
|
|
|
|
No arguments/options to manage."
|
|
|
|
|
fi
|
|
|
|
|
|
|
|
|
|
# }}}
|
|
|
|
|
|
2020-06-04 14:37:01 +02:00
|
|
|
|
main
|
|
|
|
|
|
2020-06-15 13:49:25 +02:00
|
|
|
|
exit 255
|