added documentation

README.md

@@ -0,0 +1,12 @@
+
+## how to use
+
+```sh
+graffy@graffy-ws2:~/work/convheb$ python -m venv convheb.venv
+graffy@graffy-ws2:~/work/convheb$ source ./convheb.venv/bin/activate
+(convheb.venv) graffy@graffy-ws2:~/work/convheb$ pip install requirements.txt
+(convheb.venv) graffy@graffy-ws2:~/work/convheb$ python ./create_list_for_annex.py
+```
+
+note: cocluto can be found [here](https://git.ipr.univ-rennes1.fr/cellinfo/cocluto)
+

create_list_for_annex.py

@@ -3,7 +3,7 @@ from cocluto.inventory import Inventory
 from cocluto.SimpaDbUtil import SqlDatabaseReader, SqlFile
 from urllib.parse import urlparse
 from abc import ABC, abstractmethod
-from sys import stdout
+# from sys import stdout
 import re
 
 
@@ -157,9 +157,10 @@ def main():
     machines_fqdn = get_hosted_machines_fqdn(inventory)
     print('ipr machines hosted at the dsi (%d):' % len(machines_fqdn))
 
-    table_renderer = MarkdownTableRenderer()
+    table_renderer = TsvTableRenderer()
 
-    print_machine_table(machines_fqdn, inventory, stdout, table_renderer)
+    with open('ipr-machines-at-dsi.csv', 'wt') as tsv_file:
+        print_machine_table(machines_fqdn, inventory, tsv_file, table_renderer)
 
 
 if __name__ == '__main__':

requirements.txt

@@ -0,0 +1,2 @@
+cocluto==1.0
+mysqlclient==2.1.0